Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29880

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,067,937	+		RR42_RS29875	0.38	-0.4
2,067,937	+		RR42_RS29875	0.38	-0.8
2,067,937	+		RR42_RS29875	0.38	-2.7
2,067,937	+		RR42_RS29875	0.38	+1.0
2,067,937	+		RR42_RS29875	0.38	-0.2
2,067,938	-		RR42_RS29875	0.38	-0.0
2,067,938	-		RR42_RS29875	0.38	+0.3
2,067,938	-		RR42_RS29875	0.38	+0.4
2,067,938	-		RR42_RS29875	0.38	+1.1
2,067,951	-		RR42_RS29875	0.39	-0.7
2,068,050	+		RR42_RS29875	0.47	-2.0
2,068,051	-		RR42_RS29875	0.47	+0.2
2,068,051	-		RR42_RS29875	0.47	+0.5
2,068,123	+		RR42_RS29875	0.53	+0.1
2,068,269	+		RR42_RS29875	0.64	+0.7
2,068,270	-		RR42_RS29875	0.64	+0.2
2,068,298	-		RR42_RS29875	0.67	+0.6
2,068,351	+		RR42_RS29875	0.71	+0.3
2,068,352	-		RR42_RS29875	0.71	-0.4
2,068,352	-		RR42_RS29875	0.71	+0.8
2,068,352	-		RR42_RS29875	0.71	-1.3
2,068,352	-		RR42_RS29875	0.71	-0.0
2,068,438	+		RR42_RS29875	0.78	+0.2
2,068,438	+		RR42_RS29875	0.78	+0.9
2,068,438	+		RR42_RS29875	0.78	-1.1
2,068,439	-		RR42_RS29875	0.78	-0.8
2,068,439	-		RR42_RS29875	0.78	-0.7
2,068,439	-		RR42_RS29875	0.78	+0.6
2,068,449	-		RR42_RS29875	0.78	+0.3
2,068,562	+		RR42_RS29875	0.87	+0.4
2,068,562	+		RR42_RS29875	0.87	+0.2
2,068,562	+		RR42_RS29875	0.87	-1.2
2,068,563	-		RR42_RS29875	0.88	-0.1
2,068,563	-		RR42_RS29875	0.88	+0.4
2,068,584	+		RR42_RS29875	0.89	-0.9
2,068,584	+		RR42_RS29875	0.89	-0.4
2,068,608	-				-0.7
2,068,608	-				-2.9
2,068,608	-				-0.3
2,068,719	+				+0.3
2,068,720	-				-0.1
2,068,720	-				+0.9
2,068,720	-				+0.2
2,068,720	-				-1.0
2,068,720	-				-3.0
2,068,731	+				+0.7
2,068,732	-				+1.0
2,068,847	-		RR42_RS29880	0.11	+0.7
2,068,929	+		RR42_RS29880	0.19	+0.3
2,068,929	+		RR42_RS29880	0.19	-1.4
2,068,930	-		RR42_RS29880	0.19	+0.3
2,068,930	-		RR42_RS29880	0.19	-0.3
2,068,930	-		RR42_RS29880	0.19	+0.2
2,068,930	-		RR42_RS29880	0.19	-0.6
2,068,930	-		RR42_RS29880	0.19	-1.6
2,068,930	-		RR42_RS29880	0.19	-0.2
2,068,930	-		RR42_RS29880	0.19	+1.5
2,068,931	+		RR42_RS29880	0.19	+0.1
2,068,932	-		RR42_RS29880	0.19	+3.0
2,068,932	-		RR42_RS29880	0.19	-1.0
2,068,960	+		RR42_RS29880	0.21	+0.4
2,068,961	-		RR42_RS29880	0.22	-0.9
2,069,226	-		RR42_RS29880	0.46	-0.3
2,069,226	-		RR42_RS29880	0.46	-0.1
2,069,317	+		RR42_RS29880	0.55	-1.0
2,069,317	+		RR42_RS29880	0.55	+0.3
2,069,318	-		RR42_RS29880	0.55	-0.7
2,069,327	+		RR42_RS29880	0.56	-0.1
2,069,327	+		RR42_RS29880	0.56	+0.1
2,069,516	-		RR42_RS29880	0.73	-0.0
2,069,516	-		RR42_RS29880	0.73	-2.0
2,069,554	-		RR42_RS29880	0.77	-0.0
2,069,637	+		RR42_RS29880	0.84	-0.0
2,069,637	+		RR42_RS29880	0.84	-0.5
2,069,637	+		RR42_RS29880	0.84	-3.3
2,069,637	+		RR42_RS29880	0.84	-0.4
2,069,637	+		RR42_RS29880	0.84	+0.6
2,069,637	+		RR42_RS29880	0.84	+0.2
2,069,638	-		RR42_RS29880	0.85	-1.0
2,069,638	-		RR42_RS29880	0.85	-1.6
2,069,638	-		RR42_RS29880	0.85	-0.3
2,069,806	+				-1.5
2,069,807	-				-2.0
2,069,863	+				-2.3
2,069,892	+				+0.4
2,070,129	+		RR42_RS29885	0.21	+0.5
2,070,129	+		RR42_RS29885	0.21	+0.7
2,070,130	-		RR42_RS29885	0.21	+0.2
2,070,253	+		RR42_RS29885	0.30	-1.3
2,070,254	-		RR42_RS29885	0.30	+3.3
2,070,458	-		RR42_RS29885	0.43	+0.0
2,070,458	-		RR42_RS29885	0.43	-2.1
2,070,617	+		RR42_RS29885	0.54	-1.7
2,070,617	+		RR42_RS29885	0.54	-0.4
2,070,624	+		RR42_RS29885	0.54	+0.1
2,070,625	-		RR42_RS29885	0.54	+0.8
2,070,673	-		RR42_RS29885	0.57	-0.7
2,070,730	-		RR42_RS29885	0.61	-0.5
2,070,751	+		RR42_RS29885	0.63	-1.4
2,070,751	+		RR42_RS29885	0.63	-0.5
2,070,751	+		RR42_RS29885	0.63	-0.4
2,070,751	+		RR42_RS29885	0.63	-1.2
2,070,752	-		RR42_RS29885	0.63	+0.6
2,070,752	-		RR42_RS29885	0.63	+0.4