Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29445

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,960,257	+				-0.2
1,960,258	-				-0.6
1,960,258	-				-0.2
1,960,290	+				+1.8
1,960,290	+				-0.6
1,960,290	+				-0.2
1,960,291	-				-2.7
1,960,565	+		RR42_RS29440	0.41	-0.8
1,960,565	+		RR42_RS29440	0.41	-0.8
1,960,565	+		RR42_RS29440	0.41	-0.4
1,960,566	-		RR42_RS29440	0.41	+0.6
1,960,566	-		RR42_RS29440	0.41	+0.1
1,960,566	-		RR42_RS29440	0.41	-0.6
1,960,582	-		RR42_RS29440	0.43	-0.4
1,960,674	+		RR42_RS29440	0.53	+0.3
1,960,743	+		RR42_RS29440	0.61	-0.0
1,960,746	+		RR42_RS29440	0.62	-0.3
1,960,746	+		RR42_RS29440	0.62	-0.8
1,960,746	+		RR42_RS29440	0.62	+0.1
1,960,746	+		RR42_RS29440	0.62	-0.0
1,960,747	-		RR42_RS29440	0.62	+1.3
1,960,747	-		RR42_RS29440	0.62	-0.6
1,960,747	-		RR42_RS29440	0.62	+1.1
1,960,975	-		RR42_RS29440	0.88	+0.5
1,961,008	-				+0.9
1,961,008	-				+1.1
1,961,008	-				+0.2
1,961,113	+				+0.2
1,961,151	+				+0.2
1,961,151	+				+0.4
1,961,152	-				+1.4
1,961,162	-				+0.4
1,961,245	+		RR42_RS29445	0.14	-0.7
1,961,246	-		RR42_RS29445	0.15	-0.7
1,961,335	+		RR42_RS29445	0.23	-1.8
1,961,335	+		RR42_RS29445	0.23	-0.3
1,961,336	-		RR42_RS29445	0.23	-0.8
1,961,336	-		RR42_RS29445	0.23	+0.1
1,961,337	+		RR42_RS29445	0.23	-0.4
1,961,337	+		RR42_RS29445	0.23	-0.1
1,961,338	-		RR42_RS29445	0.23	-0.2
1,961,338	-		RR42_RS29445	0.23	+0.4
1,961,338	-		RR42_RS29445	0.23	-1.0
1,961,458	+		RR42_RS29445	0.34	-2.4
1,961,458	+		RR42_RS29445	0.34	+1.2
1,961,458	+		RR42_RS29445	0.34	-1.9
1,961,459	-		RR42_RS29445	0.34	-0.6
1,961,459	-		RR42_RS29445	0.34	-1.1
1,961,459	-		RR42_RS29445	0.34	-1.3
1,961,459	-		RR42_RS29445	0.34	-2.7
1,961,459	-		RR42_RS29445	0.34	-1.0
1,961,459	-		RR42_RS29445	0.34	-1.0
1,961,575	+		RR42_RS29445	0.45	+1.0
1,961,575	+		RR42_RS29445	0.45	-0.6
1,961,576	-		RR42_RS29445	0.45	+0.2
1,961,576	-		RR42_RS29445	0.45	-0.1
1,961,576	-		RR42_RS29445	0.45	-0.5
1,961,602	+		RR42_RS29445	0.48	-0.5
1,961,602	+		RR42_RS29445	0.48	+0.2
1,961,603	-		RR42_RS29445	0.48	+0.3
1,961,603	-		RR42_RS29445	0.48	-0.2
1,961,605	+		RR42_RS29445	0.48	-1.5
1,961,605	+		RR42_RS29445	0.48	-0.6
1,961,606	-		RR42_RS29445	0.48	-0.3
1,961,606	-		RR42_RS29445	0.48	+0.7
1,961,606	-		RR42_RS29445	0.48	+3.0
1,961,797	+		RR42_RS29445	0.66	-2.7
1,961,797	+		RR42_RS29445	0.66	-1.2
1,961,816	-		RR42_RS29445	0.68	-0.8
1,961,816	-		RR42_RS29445	0.68	-1.2
1,961,816	-		RR42_RS29445	0.68	-0.1
1,961,817	+		RR42_RS29445	0.68	-0.7
1,961,818	-		RR42_RS29445	0.68	-3.1
1,961,818	-		RR42_RS29445	0.68	-0.8
1,962,010	+		RR42_RS29445	0.86	-0.3
1,962,085	+				-1.0
1,962,086	-				-0.2
1,962,107	-				+0.3
1,962,164	-				+0.2
1,962,164	-				+0.8
1,962,277	+		RR42_RS29450	0.13	+0.2
1,962,278	-		RR42_RS29450	0.13	-0.5
1,962,338	+		RR42_RS29450	0.20	+1.1
1,962,338	+		RR42_RS29450	0.20	-0.0
1,962,339	-		RR42_RS29450	0.20	-2.6
1,962,339	-		RR42_RS29450	0.20	-1.2
1,962,440	-		RR42_RS29450	0.33	-0.6
1,962,440	-		RR42_RS29450	0.33	+1.0
1,962,440	-		RR42_RS29450	0.33	-2.0
1,962,641	+		RR42_RS29450	0.58	-0.7
1,962,642	-		RR42_RS29450	0.58	+1.2
1,962,926	+				+0.8
1,962,948	+				+0.1
1,962,948	+				-0.6
1,962,948	+				+2.6
1,962,949	-				+0.1
1,962,949	-				-1.2
1,962,949	-				-0.6
1,963,051	+				-0.8
1,963,052	-				-2.0
1,963,052	-				+0.1