Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29415

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29410 and RR42_RS29415 are separated by 66 nucleotidesRR42_RS29415 and RR42_RS29420 are separated by 39 nucleotides RR42_RS29410: RR42_RS29410 - acetyl-CoA carboxylase, at 1,951,834 to 1,953,456 _RS29410 RR42_RS29415: RR42_RS29415 - acyl-CoA dehydrogenase, at 1,953,523 to 1,954,677 _RS29415 RR42_RS29420: RR42_RS29420 - 3-methylcrotonyl-CoA carboxylase, at 1,954,717 to 1,956,717 _RS29420 Position (kb) 1953 1954 1955Strain fitness (log2 ratio) -3 -2 -1 0 1at 1952.550 kb on + strand, within RR42_RS29410at 1952.550 kb on + strand, within RR42_RS29410at 1952.550 kb on + strand, within RR42_RS29410at 1952.551 kb on - strand, within RR42_RS29410at 1952.551 kb on - strand, within RR42_RS29410at 1952.551 kb on - strand, within RR42_RS29410at 1952.551 kb on - strand, within RR42_RS29410at 1952.576 kb on - strand, within RR42_RS29410at 1952.579 kb on + strand, within RR42_RS29410at 1952.674 kb on + strand, within RR42_RS29410at 1952.731 kb on - strand, within RR42_RS29410at 1952.731 kb on - strand, within RR42_RS29410at 1952.731 kb on - strand, within RR42_RS29410at 1952.806 kb on + strand, within RR42_RS29410at 1952.807 kb on - strand, within RR42_RS29410at 1952.917 kb on - strand, within RR42_RS29410at 1952.981 kb on + strand, within RR42_RS29410at 1952.981 kb on + strand, within RR42_RS29410at 1953.073 kb on + strand, within RR42_RS29410at 1953.073 kb on + strand, within RR42_RS29410at 1953.073 kb on + strand, within RR42_RS29410at 1953.073 kb on + strand, within RR42_RS29410at 1953.073 kb on + strand, within RR42_RS29410at 1953.074 kb on - strand, within RR42_RS29410at 1953.074 kb on - strand, within RR42_RS29410at 1953.103 kb on + strand, within RR42_RS29410at 1953.103 kb on + strand, within RR42_RS29410at 1953.104 kb on - strand, within RR42_RS29410at 1953.468 kb on + strandat 1953.527 kb on + strandat 1953.527 kb on + strandat 1953.716 kb on - strand, within RR42_RS29415at 1953.716 kb on - strand, within RR42_RS29415at 1953.721 kb on + strand, within RR42_RS29415at 1953.722 kb on - strand, within RR42_RS29415at 1953.877 kb on + strand, within RR42_RS29415at 1953.877 kb on + strand, within RR42_RS29415at 1953.878 kb on - strand, within RR42_RS29415at 1953.878 kb on - strand, within RR42_RS29415at 1953.964 kb on + strand, within RR42_RS29415at 1953.964 kb on + strand, within RR42_RS29415at 1953.965 kb on - strand, within RR42_RS29415at 1953.965 kb on - strand, within RR42_RS29415at 1953.965 kb on - strand, within RR42_RS29415at 1953.965 kb on - strand, within RR42_RS29415at 1953.965 kb on - strand, within RR42_RS29415at 1953.965 kb on - strand, within RR42_RS29415at 1954.036 kb on - strand, within RR42_RS29415at 1954.036 kb on - strand, within RR42_RS29415at 1954.159 kb on + strand, within RR42_RS29415at 1954.160 kb on - strand, within RR42_RS29415at 1954.218 kb on + strand, within RR42_RS29415at 1954.218 kb on + strand, within RR42_RS29415at 1954.219 kb on - strand, within RR42_RS29415at 1954.222 kb on + strand, within RR42_RS29415at 1954.222 kb on + strand, within RR42_RS29415at 1954.244 kb on + strand, within RR42_RS29415at 1954.245 kb on - strand, within RR42_RS29415at 1954.245 kb on - strand, within RR42_RS29415at 1954.312 kb on + strand, within RR42_RS29415at 1954.312 kb on + strand, within RR42_RS29415at 1954.313 kb on - strand, within RR42_RS29415at 1954.369 kb on + strand, within RR42_RS29415at 1954.369 kb on + strand, within RR42_RS29415at 1954.369 kb on + strand, within RR42_RS29415at 1954.370 kb on - strand, within RR42_RS29415at 1954.370 kb on - strand, within RR42_RS29415at 1954.549 kb on + strand, within RR42_RS29415at 1954.550 kb on - strand, within RR42_RS29415at 1954.550 kb on - strand, within RR42_RS29415at 1954.879 kb on + strandat 1954.879 kb on + strandat 1954.879 kb on + strandat 1954.879 kb on + strandat 1954.879 kb on + strandat 1954.880 kb on - strandat 1954.880 kb on - strandat 1954.880 kb on - strandat 1954.880 kb on - strandat 1954.880 kb on - strandat 1954.881 kb on + strandat 1954.882 kb on - strandat 1954.909 kb on + strandat 1954.910 kb on - strandat 1955.033 kb on + strand, within RR42_RS29420at 1955.033 kb on + strand, within RR42_RS29420at 1955.033 kb on + strand, within RR42_RS29420at 1955.034 kb on - strand, within RR42_RS29420at 1955.131 kb on + strand, within RR42_RS29420at 1955.581 kb on + strand, within RR42_RS29420at 1955.581 kb on + strand, within RR42_RS29420at 1955.581 kb on + strand, within RR42_RS29420at 1955.581 kb on + strand, within RR42_RS29420at 1955.582 kb on - strand, within RR42_RS29420at 1955.582 kb on - strand, within RR42_RS29420at 1955.584 kb on + strand, within RR42_RS29420at 1955.584 kb on + strand, within RR42_RS29420at 1955.584 kb on + strand, within RR42_RS29420at 1955.585 kb on - strand, within RR42_RS29420at 1955.585 kb on - strand, within RR42_RS29420at 1955.585 kb on - strand, within RR42_RS29420at 1955.585 kb on - strand, within RR42_RS29420at 1955.585 kb on - strand, within RR42_RS29420

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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1,952,550 + RR42_RS29410 0.44 -0.9
1,952,550 + RR42_RS29410 0.44 -1.2
1,952,550 + RR42_RS29410 0.44 -1.1
1,952,551 - RR42_RS29410 0.44 -3.3
1,952,551 - RR42_RS29410 0.44 +0.8
1,952,551 - RR42_RS29410 0.44 +0.6
1,952,551 - RR42_RS29410 0.44 -0.7
1,952,576 - RR42_RS29410 0.46 +0.1
1,952,579 + RR42_RS29410 0.46 -0.4
1,952,674 + RR42_RS29410 0.52 -0.0
1,952,731 - RR42_RS29410 0.55 -0.2
1,952,731 - RR42_RS29410 0.55 -1.0
1,952,731 - RR42_RS29410 0.55 +1.3
1,952,806 + RR42_RS29410 0.60 -2.3
1,952,807 - RR42_RS29410 0.60 +0.7
1,952,917 - RR42_RS29410 0.67 -0.6
1,952,981 + RR42_RS29410 0.71 -0.7
1,952,981 + RR42_RS29410 0.71 -3.2
1,953,073 + RR42_RS29410 0.76 -1.2
1,953,073 + RR42_RS29410 0.76 -3.4
1,953,073 + RR42_RS29410 0.76 -0.0
1,953,073 + RR42_RS29410 0.76 -2.7
1,953,073 + RR42_RS29410 0.76 +0.0
1,953,074 - RR42_RS29410 0.76 -0.4
1,953,074 - RR42_RS29410 0.76 -0.2
1,953,103 + RR42_RS29410 0.78 -1.8
1,953,103 + RR42_RS29410 0.78 -0.8
1,953,104 - RR42_RS29410 0.78 -0.2
1,953,468 + +0.5
1,953,527 + +0.3
1,953,527 + -0.7
1,953,716 - RR42_RS29415 0.17 -0.1
1,953,716 - RR42_RS29415 0.17 +1.6
1,953,721 + RR42_RS29415 0.17 -0.3
1,953,722 - RR42_RS29415 0.17 -1.4
1,953,877 + RR42_RS29415 0.31 -0.0
1,953,877 + RR42_RS29415 0.31 -1.9
1,953,878 - RR42_RS29415 0.31 +0.8
1,953,878 - RR42_RS29415 0.31 -0.1
1,953,964 + RR42_RS29415 0.38 +0.1
1,953,964 + RR42_RS29415 0.38 -2.2
1,953,965 - RR42_RS29415 0.38 +1.1
1,953,965 - RR42_RS29415 0.38 -0.9
1,953,965 - RR42_RS29415 0.38 -0.6
1,953,965 - RR42_RS29415 0.38 +0.3
1,953,965 - RR42_RS29415 0.38 +0.4
1,953,965 - RR42_RS29415 0.38 -0.4
1,954,036 - RR42_RS29415 0.44 +0.3
1,954,036 - RR42_RS29415 0.44 -0.4
1,954,159 + RR42_RS29415 0.55 -0.0
1,954,160 - RR42_RS29415 0.55 +0.8
1,954,218 + RR42_RS29415 0.60 -0.7
1,954,218 + RR42_RS29415 0.60 +0.1
1,954,219 - RR42_RS29415 0.60 -0.6
1,954,222 + RR42_RS29415 0.61 -0.5
1,954,222 + RR42_RS29415 0.61 -2.1
1,954,244 + RR42_RS29415 0.62 -0.7
1,954,245 - RR42_RS29415 0.63 -0.3
1,954,245 - RR42_RS29415 0.63 -2.2
1,954,312 + RR42_RS29415 0.68 -1.0
1,954,312 + RR42_RS29415 0.68 -1.1
1,954,313 - RR42_RS29415 0.68 +0.5
1,954,369 + RR42_RS29415 0.73 -1.2
1,954,369 + RR42_RS29415 0.73 +0.6
1,954,369 + RR42_RS29415 0.73 +0.3
1,954,370 - RR42_RS29415 0.73 +0.1
1,954,370 - RR42_RS29415 0.73 -0.3
1,954,549 + RR42_RS29415 0.89 -1.3
1,954,550 - RR42_RS29415 0.89 -0.6
1,954,550 - RR42_RS29415 0.89 +1.4
1,954,879 + -0.3
1,954,879 + +0.2
1,954,879 + -0.6
1,954,879 + -1.0
1,954,879 + -1.1
1,954,880 - -0.8
1,954,880 - +0.7
1,954,880 - -0.0
1,954,880 - -0.4
1,954,880 - -0.6
1,954,881 + -1.0
1,954,882 - -2.2
1,954,909 + -3.0
1,954,910 - +0.7
1,955,033 + RR42_RS29420 0.16 -2.0
1,955,033 + RR42_RS29420 0.16 -0.9
1,955,033 + RR42_RS29420 0.16 -0.7
1,955,034 - RR42_RS29420 0.16 -0.7
1,955,131 + RR42_RS29420 0.21 -1.2
1,955,581 + RR42_RS29420 0.43 -0.5
1,955,581 + RR42_RS29420 0.43 -1.4
1,955,581 + RR42_RS29420 0.43 -3.5
1,955,581 + RR42_RS29420 0.43 -0.1
1,955,582 - RR42_RS29420 0.43 -0.6
1,955,582 - RR42_RS29420 0.43 -2.2
1,955,584 + RR42_RS29420 0.43 -1.1
1,955,584 + RR42_RS29420 0.43 -0.0
1,955,584 + RR42_RS29420 0.43 -1.1
1,955,585 - RR42_RS29420 0.43 -3.3
1,955,585 - RR42_RS29420 0.43 -1.8
1,955,585 - RR42_RS29420 0.43 -0.0
1,955,585 - RR42_RS29420 0.43 +0.3
1,955,585 - RR42_RS29420 0.43 -0.6

Or see this region's nucleotide sequence