Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29085

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,880,250	-		RR42_RS29080	0.54	+0.4
1,880,293	-		RR42_RS29080	0.58	+0.4
1,880,330	+		RR42_RS29080	0.62	+0.9
1,880,330	+		RR42_RS29080	0.62	-1.6
1,880,384	+		RR42_RS29080	0.68	-0.1
1,880,477	+		RR42_RS29080	0.78	-1.6
1,880,477	+		RR42_RS29080	0.78	-1.9
1,880,569	+		RR42_RS29080	0.89	+0.4
1,880,569	+		RR42_RS29080	0.89	-0.5
1,880,569	+		RR42_RS29080	0.89	-0.6
1,880,569	+		RR42_RS29080	0.89	-0.2
1,880,570	-		RR42_RS29080	0.89	+0.4
1,880,570	-		RR42_RS29080	0.89	-0.3
1,880,570	-		RR42_RS29080	0.89	-0.6
1,880,570	-		RR42_RS29080	0.89	+1.5
1,880,573	+		RR42_RS29080	0.89	+1.1
1,880,573	+		RR42_RS29080	0.89	+0.1
1,880,573	+		RR42_RS29080	0.89	-1.7
1,880,573	+		RR42_RS29080	0.89	-0.6
1,880,573	+		RR42_RS29080	0.89	-2.1
1,880,573	+		RR42_RS29080	0.89	-0.5
1,880,574	-		RR42_RS29080	0.89	+0.5
1,880,574	-		RR42_RS29080	0.89	+0.5
1,880,574	-		RR42_RS29080	0.89	+0.6
1,880,574	-		RR42_RS29080	0.89	-0.1
1,880,574	-		RR42_RS29080	0.89	+0.3
1,880,574	-		RR42_RS29080	0.89	-1.3
1,880,725	-				+0.0
1,880,725	-				-0.1
1,880,725	-				+0.8
1,880,790	+				-0.2
1,880,791	-				+1.6
1,880,844	-				+1.1
1,880,844	-				+0.8
1,881,083	+				-0.5
1,881,148	+				+0.2
1,881,155	+				+1.8
1,881,155	+				+1.5
1,881,211	+				+0.8
1,881,211	+				+1.5
1,881,212	-				-1.3
1,881,212	-				+0.0
1,881,212	-				+0.4
1,881,212	-				-0.1
1,881,299	+				+1.3
1,881,299	+				+1.0
1,881,300	-				+0.2
1,881,300	-				-1.4
1,881,300	-				+1.5
1,881,300	-				-0.2
1,881,300	-				-1.3
1,881,380	-		RR42_RS29085	0.13	-0.3
1,881,404	+		RR42_RS29085	0.15	+1.8
1,881,404	+		RR42_RS29085	0.15	-1.5
1,881,404	+		RR42_RS29085	0.15	+0.3
1,881,404	+		RR42_RS29085	0.15	+0.9
1,881,404	+		RR42_RS29085	0.15	+0.3
1,881,405	-		RR42_RS29085	0.15	+0.2
1,881,405	-		RR42_RS29085	0.15	-0.2
1,881,405	-		RR42_RS29085	0.15	+0.7
1,881,405	-		RR42_RS29085	0.15	+0.2
1,881,405	-		RR42_RS29085	0.15	-1.5
1,881,405	-		RR42_RS29085	0.15	+1.0
1,881,460	+		RR42_RS29085	0.19	+0.0
1,881,461	-		RR42_RS29085	0.19	+1.8
1,881,464	+		RR42_RS29085	0.20	-0.2
1,881,464	+		RR42_RS29085	0.20	+0.5
1,881,464	+		RR42_RS29085	0.20	-0.7
1,881,465	-		RR42_RS29085	0.20	+0.3
1,881,514	+		RR42_RS29085	0.23	-1.2
1,881,523	-		RR42_RS29085	0.24	+0.1
1,881,523	-		RR42_RS29085	0.24	+0.4
1,881,684	-		RR42_RS29085	0.36	-3.0
1,881,752	+		RR42_RS29085	0.41	-0.6
1,881,752	+		RR42_RS29085	0.41	+0.3
1,881,752	+		RR42_RS29085	0.41	+0.8
1,881,752	+		RR42_RS29085	0.41	-0.1
1,881,752	+		RR42_RS29085	0.41	+0.4
1,881,854	+		RR42_RS29085	0.48	-3.2
1,881,854	+		RR42_RS29085	0.48	-0.0
1,881,855	-		RR42_RS29085	0.49	-1.6
1,881,855	-		RR42_RS29085	0.49	-0.1
1,881,855	-		RR42_RS29085	0.49	-0.7
1,881,938	+		RR42_RS29085	0.55	-0.6
1,881,938	+		RR42_RS29085	0.55	+2.0
1,881,938	+		RR42_RS29085	0.55	-0.3
1,881,938	+		RR42_RS29085	0.55	-1.0
1,881,939	-		RR42_RS29085	0.55	-0.8
1,881,939	-		RR42_RS29085	0.55	-1.8
1,881,939	-		RR42_RS29085	0.55	+0.1
1,881,981	-		RR42_RS29085	0.58	-1.7
1,881,993	-		RR42_RS29085	0.59	-0.4
1,882,013	+		RR42_RS29085	0.60	-1.0
1,882,013	+		RR42_RS29085	0.60	-0.6
1,882,013	+		RR42_RS29085	0.60	+0.2
1,882,014	-		RR42_RS29085	0.60	+0.5
1,882,014	-		RR42_RS29085	0.60	+1.4
1,882,014	-		RR42_RS29085	0.60	-0.7
1,882,167	-		RR42_RS29085	0.72	+0.0
1,882,241	+		RR42_RS29085	0.77	-0.6
1,882,241	+		RR42_RS29085	0.77	-1.0
1,882,241	+		RR42_RS29085	0.77	-0.8
1,882,241	+		RR42_RS29085	0.77	-1.8
1,882,242	-		RR42_RS29085	0.77	+1.2
1,882,242	-		RR42_RS29085	0.77	-0.6
1,882,242	-		RR42_RS29085	0.77	-0.1
1,882,242	-		RR42_RS29085	0.77	-0.5
1,882,242	-		RR42_RS29085	0.77	-1.1
1,882,375	+		RR42_RS29085	0.87	+0.5
1,882,424	+				-0.5
1,882,424	+				+0.5
1,882,425	-				-0.0
1,882,425	-				-1.5
1,882,426	+				-0.8
1,882,426	+				-1.1
1,882,426	+				-0.1
1,882,426	+				+1.0
1,882,427	-				+0.7
1,882,427	-				+1.5
1,882,427	-				+0.3
1,882,427	-				-0.8
1,882,502	+				+0.5
1,882,502	+				-0.2
1,882,503	-				+1.0
1,882,653	+				+1.0
1,882,706	+				-1.3
1,882,707	-				+0.2
1,882,707	-				+0.0
1,882,707	-				-0.1
1,882,707	-				-0.6
1,882,868	+		RR42_RS29090	0.12	+0.6
1,882,868	+		RR42_RS29090	0.12	-1.9
1,882,869	-		RR42_RS29090	0.12	+0.0
1,883,015	+		RR42_RS29090	0.21	+0.0
1,883,017	+		RR42_RS29090	0.21	+0.5
1,883,017	+		RR42_RS29090	0.21	+0.2
1,883,017	+		RR42_RS29090	0.21	+2.0
1,883,017	+		RR42_RS29090	0.21	-3.0
1,883,018	-		RR42_RS29090	0.21	-0.9
1,883,154	-		RR42_RS29090	0.30	-0.1
1,883,192	+		RR42_RS29090	0.33	+1.2
1,883,193	-		RR42_RS29090	0.33	+0.3
1,883,443	+		RR42_RS29090	0.49	+0.7
1,883,444	-		RR42_RS29090	0.49	+0.7