Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29000

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,862,366	+				-0.0
1,862,625	-		RR42_RS28995	0.30	-1.7
1,862,678	+		RR42_RS28995	0.36	+0.9
1,862,678	+		RR42_RS28995	0.36	-0.1
1,862,850	+		RR42_RS28995	0.57	-0.2
1,862,850	+		RR42_RS28995	0.57	+0.1
1,862,852	+		RR42_RS28995	0.57	+0.9
1,862,852	+		RR42_RS28995	0.57	-1.4
1,862,852	+		RR42_RS28995	0.57	-1.3
1,862,852	+		RR42_RS28995	0.57	-0.9
1,862,852	+		RR42_RS28995	0.57	+0.3
1,862,853	-		RR42_RS28995	0.57	+1.8
1,862,853	-		RR42_RS28995	0.57	+1.0
1,862,853	-		RR42_RS28995	0.57	-0.9
1,862,957	+		RR42_RS28995	0.69	+0.5
1,862,958	-		RR42_RS28995	0.69	-1.3
1,863,009	-		RR42_RS28995	0.75	-0.2
1,863,189	-				+2.0
1,863,189	-				-0.5
1,863,212	-				-1.2
1,863,212	-				+0.3
1,863,212	-				-0.9
1,863,216	-				-1.0
1,863,216	-				-0.1
1,863,216	-				-0.6
1,863,216	-				+0.6
1,863,216	-				-2.0
1,863,335	-				-0.1
1,863,472	+		RR42_RS29000	0.26	-0.6
1,863,544	+		RR42_RS29000	0.36	-1.1
1,863,544	+		RR42_RS29000	0.36	-1.3
1,863,545	-		RR42_RS29000	0.37	+0.3
1,863,545	-		RR42_RS29000	0.37	-0.7
1,863,545	-		RR42_RS29000	0.37	-0.6
1,863,625	+		RR42_RS29000	0.48	-0.3
1,863,625	+		RR42_RS29000	0.48	-0.2
1,863,626	-		RR42_RS29000	0.48	-0.5
1,863,626	-		RR42_RS29000	0.48	+0.8
1,863,811	+		RR42_RS29000	0.74	+0.6
1,863,811	+		RR42_RS29000	0.74	+2.0
1,864,061	+				+0.1
1,864,061	+				-0.4
1,864,062	-				-1.5
1,864,062	-				-0.9
1,864,064	+				+1.5
1,864,064	+				+1.0
1,864,064	+				+0.5
1,864,064	+				+0.7
1,864,064	+				-2.5
1,864,064	+				+0.5
1,864,065	-				+0.4
1,864,065	-				-0.1
1,864,065	-				-0.3
1,864,067	+				-1.4
1,864,068	-				+0.6
1,864,068	-				+0.8
1,864,068	-				-0.1
1,864,070	-				-2.2
1,864,094	-				-0.7
1,864,108	-				-0.7
1,864,108	-				-0.2
1,864,121	+				-0.1
1,864,121	+				-0.6
1,864,142	+				-1.2
1,864,145	-				+0.2
1,864,145	-				-0.1
1,864,148	+				-0.4
1,864,148	+				-0.8
1,864,149	-				-0.9
1,864,156	+				-0.3
1,864,209	+				+2.4
1,864,213	+				-0.5
1,864,213	+				-0.3
1,864,214	-				-0.1
1,864,214	-				+0.3
1,864,214	-				-0.8
1,864,222	+				+0.3
1,864,337	-		RR42_RS29005	0.31	+2.2
1,864,360	+		RR42_RS29005	0.36	+0.4
1,864,361	-		RR42_RS29005	0.36	-0.2
1,864,381	+		RR42_RS29005	0.40	+1.6
1,864,382	-		RR42_RS29005	0.40	-3.3
1,864,522	-		RR42_RS29005	0.68	-0.1
1,864,543	+		RR42_RS29005	0.72	-1.2
1,864,543	+		RR42_RS29005	0.72	-0.6
1,864,544	-		RR42_RS29005	0.72	+0.2
1,864,701	+				+2.4
1,864,702	-				-0.1
1,864,791	+				+0.4
1,864,791	+				-0.6
1,864,791	+				-0.2
1,864,791	+				+1.5
1,864,791	+				-0.4
1,864,792	-		RR42_RS29010	0.10	-2.5
1,864,792	-		RR42_RS29010	0.10	-1.5
1,864,794	+		RR42_RS29010	0.10	+0.1
1,864,795	-		RR42_RS29010	0.10	+0.1
1,864,795	-		RR42_RS29010	0.10	-0.0
1,864,795	-		RR42_RS29010	0.10	+0.8
1,864,936	-		RR42_RS29010	0.26	-1.4
1,864,936	-		RR42_RS29010	0.26	+0.3
1,864,936	-		RR42_RS29010	0.26	+0.0
1,864,936	-		RR42_RS29010	0.26	-0.0
1,864,936	-		RR42_RS29010	0.26	+0.3
1,864,936	-		RR42_RS29010	0.26	-0.0
1,864,936	-		RR42_RS29010	0.26	-0.8
1,864,936	-		RR42_RS29010	0.26	+0.0