Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28975

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28965 and RR42_RS28970 are separated by 61 nucleotidesRR42_RS28970 and RR42_RS28975 are separated by 15 nucleotidesRR42_RS28975 and RR42_RS28980 are separated by 180 nucleotides RR42_RS28965: RR42_RS28965 - hypothetical protein, at 1,856,240 to 1,856,707 _RS28965 RR42_RS28970: RR42_RS28970 - 3-oxoacyl-ACP reductase, at 1,856,769 to 1,857,527 _RS28970 RR42_RS28975: RR42_RS28975 - acid phosphatase, at 1,857,543 to 1,858,343 _RS28975 RR42_RS28980: RR42_RS28980 - fatty acid--CoA ligase, at 1,858,524 to 1,860,266 _RS28980 Position (kb) 1857 1858 1859Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1856.602 kb on + strand, within RR42_RS28965at 1856.602 kb on + strand, within RR42_RS28965at 1856.603 kb on - strandat 1856.603 kb on - strand, within RR42_RS28965at 1856.613 kb on - strand, within RR42_RS28965at 1856.621 kb on + strand, within RR42_RS28965at 1856.621 kb on + strand, within RR42_RS28965at 1856.622 kb on - strand, within RR42_RS28965at 1856.622 kb on - strand, within RR42_RS28965at 1856.656 kb on + strand, within RR42_RS28965at 1856.705 kb on + strandat 1856.705 kb on + strandat 1856.705 kb on + strandat 1856.705 kb on + strandat 1856.705 kb on + strandat 1856.705 kb on + strandat 1856.705 kb on + strandat 1856.706 kb on - strandat 1856.706 kb on - strandat 1856.706 kb on - strandat 1856.879 kb on + strand, within RR42_RS28970at 1857.237 kb on + strand, within RR42_RS28970at 1857.238 kb on - strand, within RR42_RS28970at 1857.238 kb on - strand, within RR42_RS28970at 1857.238 kb on - strand, within RR42_RS28970at 1857.325 kb on - strand, within RR42_RS28970at 1857.348 kb on - strand, within RR42_RS28970at 1857.544 kb on + strandat 1857.544 kb on + strandat 1857.544 kb on + strandat 1857.545 kb on - strandat 1857.757 kb on + strand, within RR42_RS28975at 1857.757 kb on + strand, within RR42_RS28975at 1857.758 kb on - strand, within RR42_RS28975at 1857.758 kb on - strand, within RR42_RS28975at 1857.842 kb on + strand, within RR42_RS28975at 1857.857 kb on - strandat 1857.940 kb on + strand, within RR42_RS28975at 1857.940 kb on + strand, within RR42_RS28975at 1857.941 kb on - strand, within RR42_RS28975at 1857.941 kb on - strand, within RR42_RS28975at 1857.967 kb on - strand, within RR42_RS28975at 1858.004 kb on - strand, within RR42_RS28975at 1858.260 kb on + strand, within RR42_RS28975at 1858.774 kb on + strand, within RR42_RS28980at 1858.801 kb on + strand, within RR42_RS28980at 1858.801 kb on + strand, within RR42_RS28980at 1858.801 kb on + strand, within RR42_RS28980at 1858.801 kb on + strand, within RR42_RS28980at 1858.801 kb on + strand, within RR42_RS28980at 1858.802 kb on - strand, within RR42_RS28980at 1858.802 kb on - strand, within RR42_RS28980at 1858.802 kb on - strand, within RR42_RS28980at 1858.829 kb on + strand, within RR42_RS28980at 1858.829 kb on + strand, within RR42_RS28980at 1858.829 kb on + strand, within RR42_RS28980at 1858.850 kb on + strand, within RR42_RS28980at 1858.850 kb on + strand, within RR42_RS28980at 1858.851 kb on - strand, within RR42_RS28980at 1858.851 kb on - strand, within RR42_RS28980at 1858.851 kb on - strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.852 kb on + strand, within RR42_RS28980at 1858.853 kb on - strand, within RR42_RS28980at 1858.853 kb on - strand, within RR42_RS28980at 1858.853 kb on - strand, within RR42_RS28980at 1858.853 kb on - strand, within RR42_RS28980at 1859.080 kb on + strand, within RR42_RS28980at 1859.080 kb on + strand, within RR42_RS28980at 1859.080 kb on + strand, within RR42_RS28980at 1859.081 kb on - strand, within RR42_RS28980at 1859.081 kb on - strand, within RR42_RS28980

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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1,856,602 + RR42_RS28965 0.77 +0.5
1,856,602 + RR42_RS28965 0.77 -0.6
1,856,603 - +1.8
1,856,603 - RR42_RS28965 0.78 +0.9
1,856,613 - RR42_RS28965 0.80 +0.3
1,856,621 + RR42_RS28965 0.81 -0.4
1,856,621 + RR42_RS28965 0.81 +0.1
1,856,622 - RR42_RS28965 0.82 -1.9
1,856,622 - RR42_RS28965 0.82 +0.5
1,856,656 + RR42_RS28965 0.89 -1.4
1,856,705 + -3.4
1,856,705 + +0.3
1,856,705 + +0.9
1,856,705 + -0.8
1,856,705 + +2.6
1,856,705 + +0.3
1,856,705 + -1.6
1,856,706 - +0.0
1,856,706 - -0.0
1,856,706 - -0.2
1,856,879 + RR42_RS28970 0.14 +1.0
1,857,237 + RR42_RS28970 0.62 -1.0
1,857,238 - RR42_RS28970 0.62 -0.4
1,857,238 - RR42_RS28970 0.62 -0.5
1,857,238 - RR42_RS28970 0.62 +0.4
1,857,325 - RR42_RS28970 0.73 -1.4
1,857,348 - RR42_RS28970 0.76 -1.0
1,857,544 + -0.8
1,857,544 + -1.3
1,857,544 + +0.1
1,857,545 - -2.7
1,857,757 + RR42_RS28975 0.27 +0.5
1,857,757 + RR42_RS28975 0.27 +0.9
1,857,758 - RR42_RS28975 0.27 -0.3
1,857,758 - RR42_RS28975 0.27 +0.5
1,857,842 + RR42_RS28975 0.37 -0.7
1,857,857 - +1.0
1,857,940 + RR42_RS28975 0.50 +1.0
1,857,940 + RR42_RS28975 0.50 -0.2
1,857,941 - RR42_RS28975 0.50 +0.8
1,857,941 - RR42_RS28975 0.50 -0.6
1,857,967 - RR42_RS28975 0.53 +0.4
1,858,004 - RR42_RS28975 0.58 -0.0
1,858,260 + RR42_RS28975 0.90 -1.5
1,858,774 + RR42_RS28980 0.14 -0.9
1,858,801 + RR42_RS28980 0.16 +0.4
1,858,801 + RR42_RS28980 0.16 +0.8
1,858,801 + RR42_RS28980 0.16 -0.6
1,858,801 + RR42_RS28980 0.16 -0.0
1,858,801 + RR42_RS28980 0.16 +0.5
1,858,802 - RR42_RS28980 0.16 +0.9
1,858,802 - RR42_RS28980 0.16 +0.6
1,858,802 - RR42_RS28980 0.16 +1.3
1,858,829 + RR42_RS28980 0.17 +0.4
1,858,829 + RR42_RS28980 0.17 +0.5
1,858,829 + RR42_RS28980 0.17 +0.5
1,858,850 + RR42_RS28980 0.19 +1.1
1,858,850 + RR42_RS28980 0.19 +1.5
1,858,851 - RR42_RS28980 0.19 +0.1
1,858,851 - RR42_RS28980 0.19 -0.7
1,858,851 - RR42_RS28980 0.19 -0.7
1,858,852 + RR42_RS28980 0.19 +0.7
1,858,852 + RR42_RS28980 0.19 -0.7
1,858,852 + RR42_RS28980 0.19 -1.8
1,858,852 + RR42_RS28980 0.19 +0.3
1,858,852 + RR42_RS28980 0.19 +0.0
1,858,852 + RR42_RS28980 0.19 -0.7
1,858,852 + RR42_RS28980 0.19 -0.8
1,858,853 - RR42_RS28980 0.19 +0.0
1,858,853 - RR42_RS28980 0.19 +1.2
1,858,853 - RR42_RS28980 0.19 +0.4
1,858,853 - RR42_RS28980 0.19 -0.6
1,859,080 + RR42_RS28980 0.32 -1.0
1,859,080 + RR42_RS28980 0.32 -0.2
1,859,080 + RR42_RS28980 0.32 -1.6
1,859,081 - RR42_RS28980 0.32 +1.5
1,859,081 - RR42_RS28980 0.32 -0.9

Or see this region's nucleotide sequence