Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28940

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,850,077	+				+1.3
1,850,113	+				+1.4
1,850,114	-				+1.0
1,850,114	-				+1.0
1,850,114	-				-0.0
1,850,158	+		RR42_RS28935	0.14	+1.3
1,850,158	+		RR42_RS28935	0.14	+1.1
1,850,159	-		RR42_RS28935	0.14	+0.9
1,850,159	-		RR42_RS28935	0.14	+1.9
1,850,219	+		RR42_RS28935	0.25	-0.6
1,850,242	+		RR42_RS28935	0.29	+0.1
1,850,312	+		RR42_RS28935	0.41	+1.0
1,850,312	+		RR42_RS28935	0.41	+0.9
1,850,313	-		RR42_RS28935	0.41	+1.4
1,850,313	-		RR42_RS28935	0.41	-0.6
1,850,409	+		RR42_RS28935	0.57	-2.0
1,850,409	+		RR42_RS28935	0.57	+1.9
1,850,409	+		RR42_RS28935	0.57	+1.2
1,850,409	+		RR42_RS28935	0.57	+2.0
1,850,409	+		RR42_RS28935	0.57	+3.0
1,850,410	-		RR42_RS28935	0.57	+0.1
1,850,410	-		RR42_RS28935	0.57	+2.5
1,850,410	-		RR42_RS28935	0.57	+1.2
1,850,410	-		RR42_RS28935	0.57	+1.8
1,850,410	-		RR42_RS28935	0.57	+0.5
1,850,410	-		RR42_RS28935	0.57	+1.5
1,850,430	-		RR42_RS28935	0.61	+0.8
1,850,465	+		RR42_RS28935	0.67	+1.0
1,850,466	-				-0.0
1,850,600	+				-0.6
1,850,644	+				+3.0
1,850,644	+				+1.0
1,850,644	+				+1.9
1,850,645	-				+0.7
1,850,645	-				-1.1
1,850,645	-				+1.1
1,850,645	-				+1.9
1,850,757	-				+0.7
1,850,937	+				-0.1
1,850,953	+				-0.3
1,850,954	-				-0.2
1,850,962	-				-2.2
1,851,110	-				+0.1
1,851,110	-				+0.6
1,851,153	+				+0.3
1,851,153	+				-0.1
1,851,153	+				+0.4
1,851,153	+				+0.3
1,851,154	-				-2.9
1,851,154	-				+0.4
1,851,261	+		RR42_RS28940	0.17	-0.0
1,851,261	+		RR42_RS28940	0.17	+0.3
1,851,261	+		RR42_RS28940	0.17	+0.1
1,851,261	+		RR42_RS28940	0.17	-0.4
1,851,261	+		RR42_RS28940	0.17	+0.2
1,851,262	-		RR42_RS28940	0.17	-0.8
1,851,262	-		RR42_RS28940	0.17	-0.3
1,851,262	-		RR42_RS28940	0.17	-0.4
1,851,262	-		RR42_RS28940	0.17	+0.2
1,851,303	+		RR42_RS28940	0.20	+0.7
1,851,303	+		RR42_RS28940	0.20	-0.3
1,851,304	-		RR42_RS28940	0.20	-1.7
1,851,304	-		RR42_RS28940	0.20	+0.3
1,851,304	-		RR42_RS28940	0.20	-0.4
1,851,304	-		RR42_RS28940	0.20	-1.0
1,851,321	+		RR42_RS28940	0.22	-1.1
1,851,321	+		RR42_RS28940	0.22	-0.8
1,851,321	+		RR42_RS28940	0.22	+0.3
1,851,321	+		RR42_RS28940	0.22	+0.9
1,851,618	+		RR42_RS28940	0.46	+1.4
1,851,618	+		RR42_RS28940	0.46	+1.5
1,851,618	+		RR42_RS28940	0.46	-1.6
1,851,618	+		RR42_RS28940	0.46	-0.7
1,851,619	-		RR42_RS28940	0.46	-1.1
1,851,619	-		RR42_RS28940	0.46	+0.8
1,851,620	+		RR42_RS28940	0.46	-1.2
1,851,620	+		RR42_RS28940	0.46	+0.2
1,851,621	-		RR42_RS28940	0.46	+0.7
1,851,685	-		RR42_RS28940	0.52	+0.3
1,851,720	+		RR42_RS28940	0.55	-0.6
1,851,762	+		RR42_RS28940	0.58	+1.5
1,851,762	+		RR42_RS28940	0.58	+0.5
1,852,020	-		RR42_RS28940	0.79	+3.8
1,852,316	+				-0.2
1,852,349	+				+0.1
1,852,451	+		RR42_RS28945	0.12	-2.2
1,852,451	+		RR42_RS28945	0.12	-1.6
1,852,451	+		RR42_RS28945	0.12	-0.3
1,852,451	+		RR42_RS28945	0.12	+0.9
1,852,451	+		RR42_RS28945	0.12	-0.0
1,852,452	-		RR42_RS28945	0.13	-0.2
1,852,452	-		RR42_RS28945	0.13	-1.6
1,852,452	-		RR42_RS28945	0.13	+0.2
1,852,452	-		RR42_RS28945	0.13	-0.8
1,852,452	-		RR42_RS28945	0.13	+0.2
1,852,452	-		RR42_RS28945	0.13	-0.1
1,852,474	-		RR42_RS28945	0.15	+0.1
1,852,481	+		RR42_RS28945	0.16	-0.1
1,852,482	-		RR42_RS28945	0.16	+0.5
1,852,490	-		RR42_RS28945	0.17	-0.6
1,852,636	+		RR42_RS28945	0.35	+0.1
1,852,637	-		RR42_RS28945	0.35	-1.0
1,852,652	+		RR42_RS28945	0.37	-0.1
1,852,937	+		RR42_RS28945	0.71	-0.0
1,852,938	-		RR42_RS28945	0.71	-2.3
1,852,946	-				-0.6
1,852,965	+		RR42_RS28945	0.74	-0.2
1,852,998	-		RR42_RS28945	0.78	-0.5
1,853,132	+				+0.2
1,853,132	+				-1.3
1,853,132	+				-1.8
1,853,132	+				+0.1
1,853,132	+				-0.0
1,853,132	+				-3.1
1,853,132	+				-0.0
1,853,133	-				+0.9
1,853,133	-				+0.1
1,853,133	-				-0.1
1,853,133	-				+1.0
1,853,133	-				-0.4
1,853,133	-				-0.3
1,853,133	-				-0.2
1,853,133	-				+0.3
1,853,133	-				-0.3
1,853,133	-				+0.3
1,853,153	+				-2.8
1,853,154	-				-1.3
1,853,169	+				-0.3
1,853,169	+				-0.6
1,853,169	+				-0.0
1,853,169	+				-0.6
1,853,169	+				-0.2
1,853,169	+				-0.8
1,853,169	+				+1.7
1,853,169	+				+0.1
1,853,170	-				-0.5
1,853,170	-				+0.2
1,853,170	-				-0.6
1,853,170	-				-0.8
1,853,207	+				-0.8
1,853,207	+				-2.1
1,853,207	+				-0.2
1,853,207	+				-0.2
1,853,208	-				+0.2
1,853,208	-				-0.1