Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27875 and RR42_RS27880 are separated by 79 nucleotides RR42_RS27880 and RR42_RS27885 are separated by 32 nucleotides RR42_RS27885 and RR42_RS27890 are separated by 52 nucleotides
RR42_RS27875: RR42_RS27875 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 1,616,279 to 1,618,063
_RS27875
RR42_RS27880: RR42_RS27880 - 3-(2,3-dihydroxyphenyl)propionate dioxygenase, at 1,618,143 to 1,619,093
_RS27880
RR42_RS27885: RR42_RS27885 - 2-keto-4-pentenoate hydratase, at 1,619,126 to 1,619,902
_RS27885
RR42_RS27890: RR42_RS27890 - hypothetical protein, at 1,619,955 to 1,620,935
_RS27890
Position (kb) 1618
1619
1620 Strain fitness (log2 ratio) -1
0
1
2 at 1617.210 kb on - strand, within RR42_RS27875 at 1617.210 kb on - strand, within RR42_RS27875 at 1617.299 kb on + strand, within RR42_RS27875 at 1617.300 kb on - strand, within RR42_RS27875 at 1617.446 kb on + strand, within RR42_RS27875 at 1617.446 kb on + strand, within RR42_RS27875 at 1617.706 kb on + strand, within RR42_RS27875 at 1617.707 kb on - strand, within RR42_RS27875 at 1617.980 kb on - strand at 1618.094 kb on - strand at 1619.002 kb on - strand at 1619.507 kb on + strand, within RR42_RS27885 at 1619.557 kb on + strand, within RR42_RS27885 at 1619.565 kb on - strand, within RR42_RS27885
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 1,617,210 - RR42_RS27875 0.52 -0.6 1,617,210 - RR42_RS27875 0.52 -0.6 1,617,299 + RR42_RS27875 0.57 -1.3 1,617,300 - RR42_RS27875 0.57 -0.2 1,617,446 + RR42_RS27875 0.65 +0.3 1,617,446 + RR42_RS27875 0.65 +0.0 1,617,706 + RR42_RS27875 0.80 +0.4 1,617,707 - RR42_RS27875 0.80 +1.0 1,617,980 - -0.4 1,618,094 - +0.2 1,619,002 - -1.0 1,619,507 + RR42_RS27885 0.49 +0.3 1,619,557 + RR42_RS27885 0.55 +2.0 1,619,565 - RR42_RS27885 0.56 +1.9
Or see this region's nucleotide sequence