Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25790

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25785 and RR42_RS25790 are separated by 317 nucleotidesRR42_RS25790 and RR42_RS25795 overlap by 23 nucleotidesRR42_RS25795 and RR42_RS25800 are separated by 40 nucleotides RR42_RS25785: RR42_RS25785 - TetR family transcriptional regulator, at 1,124,154 to 1,124,855 _RS25785 RR42_RS25790: RR42_RS25790 - acylaldehyde oxidase, at 1,125,173 to 1,127,419 _RS25790 RR42_RS25795: RR42_RS25795 - (2Fe-2S)-binding protein, at 1,127,397 to 1,127,843 _RS25795 RR42_RS25800: RR42_RS25800 - porin, at 1,127,884 to 1,128,963 _RS25800 Position (kb) 1125 1126 1127 1128Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1124.229 kb on + strand, within RR42_RS25785at 1124.455 kb on + strand, within RR42_RS25785at 1124.559 kb on - strand, within RR42_RS25785at 1124.903 kb on - strandat 1124.937 kb on + strandat 1124.938 kb on - strandat 1124.938 kb on - strandat 1125.006 kb on + strandat 1125.007 kb on - strandat 1125.133 kb on + strandat 1125.141 kb on - strandat 1125.162 kb on + strandat 1125.351 kb on + strandat 1125.364 kb on + strandat 1125.445 kb on + strand, within RR42_RS25790at 1125.588 kb on + strand, within RR42_RS25790at 1125.589 kb on - strand, within RR42_RS25790at 1125.674 kb on - strand, within RR42_RS25790at 1125.717 kb on + strand, within RR42_RS25790at 1125.718 kb on - strand, within RR42_RS25790at 1125.864 kb on + strand, within RR42_RS25790at 1125.864 kb on + strand, within RR42_RS25790at 1125.876 kb on + strand, within RR42_RS25790at 1125.877 kb on - strand, within RR42_RS25790at 1125.877 kb on - strand, within RR42_RS25790at 1125.877 kb on - strand, within RR42_RS25790at 1125.945 kb on + strand, within RR42_RS25790at 1125.946 kb on - strand, within RR42_RS25790at 1125.946 kb on - strand, within RR42_RS25790at 1126.041 kb on + strand, within RR42_RS25790at 1126.041 kb on + strand, within RR42_RS25790at 1126.041 kb on + strand, within RR42_RS25790at 1126.042 kb on - strand, within RR42_RS25790at 1126.042 kb on - strand, within RR42_RS25790at 1126.042 kb on - strand, within RR42_RS25790at 1126.140 kb on + strand, within RR42_RS25790at 1126.167 kb on + strand, within RR42_RS25790at 1126.167 kb on + strand, within RR42_RS25790at 1126.168 kb on - strand, within RR42_RS25790at 1126.326 kb on + strand, within RR42_RS25790at 1126.326 kb on + strand, within RR42_RS25790at 1126.326 kb on + strand, within RR42_RS25790at 1126.326 kb on + strand, within RR42_RS25790at 1126.326 kb on + strand, within RR42_RS25790at 1126.326 kb on + strand, within RR42_RS25790at 1126.327 kb on - strand, within RR42_RS25790at 1126.327 kb on - strand, within RR42_RS25790at 1126.327 kb on - strand, within RR42_RS25790at 1126.327 kb on - strand, within RR42_RS25790at 1126.338 kb on + strand, within RR42_RS25790at 1126.339 kb on - strand, within RR42_RS25790at 1126.427 kb on - strand, within RR42_RS25790at 1126.427 kb on - strand, within RR42_RS25790at 1126.427 kb on - strand, within RR42_RS25790at 1126.471 kb on + strand, within RR42_RS25790at 1126.472 kb on - strand, within RR42_RS25790at 1126.472 kb on - strand, within RR42_RS25790at 1126.557 kb on - strand, within RR42_RS25790at 1127.010 kb on + strand, within RR42_RS25790at 1127.010 kb on + strand, within RR42_RS25790at 1127.011 kb on - strand, within RR42_RS25790at 1127.037 kb on + strand, within RR42_RS25790at 1127.074 kb on - strand, within RR42_RS25790at 1127.160 kb on + strand, within RR42_RS25790at 1127.160 kb on + strand, within RR42_RS25790at 1127.160 kb on + strand, within RR42_RS25790at 1127.160 kb on + strand, within RR42_RS25790at 1127.161 kb on - strand, within RR42_RS25790at 1127.287 kb on - strandat 1127.298 kb on - strandat 1127.443 kb on + strand, within RR42_RS25795at 1127.444 kb on - strand, within RR42_RS25795at 1127.444 kb on - strand, within RR42_RS25795at 1127.496 kb on - strand, within RR42_RS25795at 1127.555 kb on - strand, within RR42_RS25795at 1127.568 kb on + strand, within RR42_RS25795at 1127.682 kb on + strand, within RR42_RS25795at 1127.704 kb on - strand, within RR42_RS25795at 1127.704 kb on - strand, within RR42_RS25795at 1127.704 kb on - strand, within RR42_RS25795at 1127.723 kb on + strand, within RR42_RS25795at 1127.724 kb on - strand, within RR42_RS25795at 1127.724 kb on - strand, within RR42_RS25795at 1127.729 kb on + strand, within RR42_RS25795at 1127.730 kb on - strand, within RR42_RS25795at 1127.896 kb on - strandat 1127.925 kb on + strandat 1127.985 kb on - strandat 1128.000 kb on - strand, within RR42_RS25800at 1128.023 kb on + strand, within RR42_RS25800at 1128.023 kb on + strand, within RR42_RS25800at 1128.023 kb on + strand, within RR42_RS25800at 1128.026 kb on + strand, within RR42_RS25800at 1128.027 kb on - strand, within RR42_RS25800at 1128.027 kb on - strand, within RR42_RS25800at 1128.027 kb on - strand, within RR42_RS25800at 1128.083 kb on + strand, within RR42_RS25800at 1128.090 kb on + strand, within RR42_RS25800at 1128.172 kb on + strand, within RR42_RS25800at 1128.172 kb on + strand, within RR42_RS25800at 1128.173 kb on - strand, within RR42_RS25800at 1128.188 kb on + strand, within RR42_RS25800at 1128.189 kb on - strand, within RR42_RS25800at 1128.330 kb on + strand, within RR42_RS25800at 1128.392 kb on + strand, within RR42_RS25800at 1128.392 kb on + strand, within RR42_RS25800at 1128.393 kb on - strand, within RR42_RS25800at 1128.393 kb on - strand, within RR42_RS25800at 1128.393 kb on - strand, within RR42_RS25800at 1128.393 kb on - strand, within RR42_RS25800at 1128.409 kb on - strand, within RR42_RS25800at 1128.409 kb on - strand, within RR42_RS25800at 1128.409 kb on - strand, within RR42_RS25800at 1128.411 kb on - strand, within RR42_RS25800at 1128.411 kb on - strand, within RR42_RS25800at 1128.411 kb on - strand, within RR42_RS25800

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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1,124,229 + RR42_RS25785 0.11 -0.1
1,124,455 + RR42_RS25785 0.43 -2.1
1,124,559 - RR42_RS25785 0.58 -3.3
1,124,903 - -0.3
1,124,937 + -0.3
1,124,938 - +0.4
1,124,938 - -2.2
1,125,006 + +0.6
1,125,007 - +0.1
1,125,133 + -0.1
1,125,141 - +0.9
1,125,162 + +0.7
1,125,351 + +0.6
1,125,364 + -1.3
1,125,445 + RR42_RS25790 0.12 -2.3
1,125,588 + RR42_RS25790 0.18 -0.4
1,125,589 - RR42_RS25790 0.19 +1.9
1,125,674 - RR42_RS25790 0.22 +0.9
1,125,717 + RR42_RS25790 0.24 +0.7
1,125,718 - RR42_RS25790 0.24 -0.0
1,125,864 + RR42_RS25790 0.31 -1.1
1,125,864 + RR42_RS25790 0.31 +0.2
1,125,876 + RR42_RS25790 0.31 -0.9
1,125,877 - RR42_RS25790 0.31 -0.4
1,125,877 - RR42_RS25790 0.31 +0.5
1,125,877 - RR42_RS25790 0.31 +0.3
1,125,945 + RR42_RS25790 0.34 -2.1
1,125,946 - RR42_RS25790 0.34 +2.0
1,125,946 - RR42_RS25790 0.34 -1.1
1,126,041 + RR42_RS25790 0.39 +0.3
1,126,041 + RR42_RS25790 0.39 +3.0
1,126,041 + RR42_RS25790 0.39 +0.0
1,126,042 - RR42_RS25790 0.39 +1.4
1,126,042 - RR42_RS25790 0.39 -0.7
1,126,042 - RR42_RS25790 0.39 +1.7
1,126,140 + RR42_RS25790 0.43 +0.4
1,126,167 + RR42_RS25790 0.44 +0.1
1,126,167 + RR42_RS25790 0.44 -1.1
1,126,168 - RR42_RS25790 0.44 -2.3
1,126,326 + RR42_RS25790 0.51 -0.1
1,126,326 + RR42_RS25790 0.51 -4.0
1,126,326 + RR42_RS25790 0.51 -3.3
1,126,326 + RR42_RS25790 0.51 -0.8
1,126,326 + RR42_RS25790 0.51 -1.8
1,126,326 + RR42_RS25790 0.51 +1.6
1,126,327 - RR42_RS25790 0.51 +0.0
1,126,327 - RR42_RS25790 0.51 -0.4
1,126,327 - RR42_RS25790 0.51 +0.8
1,126,327 - RR42_RS25790 0.51 -1.1
1,126,338 + RR42_RS25790 0.52 +0.5
1,126,339 - RR42_RS25790 0.52 -0.2
1,126,427 - RR42_RS25790 0.56 +0.3
1,126,427 - RR42_RS25790 0.56 +0.2
1,126,427 - RR42_RS25790 0.56 +0.0
1,126,471 + RR42_RS25790 0.58 +1.0
1,126,472 - RR42_RS25790 0.58 +0.4
1,126,472 - RR42_RS25790 0.58 +0.8
1,126,557 - RR42_RS25790 0.62 -0.1
1,127,010 + RR42_RS25790 0.82 +1.5
1,127,010 + RR42_RS25790 0.82 +0.6
1,127,011 - RR42_RS25790 0.82 -0.7
1,127,037 + RR42_RS25790 0.83 -0.1
1,127,074 - RR42_RS25790 0.85 +0.5
1,127,160 + RR42_RS25790 0.88 -2.0
1,127,160 + RR42_RS25790 0.88 -2.6
1,127,160 + RR42_RS25790 0.88 +0.1
1,127,160 + RR42_RS25790 0.88 -0.5
1,127,161 - RR42_RS25790 0.88 +0.2
1,127,287 - +0.7
1,127,298 - -1.1
1,127,443 + RR42_RS25795 0.10 +0.1
1,127,444 - RR42_RS25795 0.11 +1.1
1,127,444 - RR42_RS25795 0.11 -0.7
1,127,496 - RR42_RS25795 0.22 +0.7
1,127,555 - RR42_RS25795 0.35 +1.2
1,127,568 + RR42_RS25795 0.38 -2.1
1,127,682 + RR42_RS25795 0.64 -0.6
1,127,704 - RR42_RS25795 0.69 +0.5
1,127,704 - RR42_RS25795 0.69 +1.0
1,127,704 - RR42_RS25795 0.69 +0.6
1,127,723 + RR42_RS25795 0.73 +1.0
1,127,724 - RR42_RS25795 0.73 +0.9
1,127,724 - RR42_RS25795 0.73 -0.6
1,127,729 + RR42_RS25795 0.74 +2.3
1,127,730 - RR42_RS25795 0.74 +0.6
1,127,896 - -0.8
1,127,925 + -1.4
1,127,985 - +1.7
1,128,000 - RR42_RS25800 0.11 -0.8
1,128,023 + RR42_RS25800 0.13 -0.5
1,128,023 + RR42_RS25800 0.13 -1.3
1,128,023 + RR42_RS25800 0.13 +0.2
1,128,026 + RR42_RS25800 0.13 -1.3
1,128,027 - RR42_RS25800 0.13 -1.4
1,128,027 - RR42_RS25800 0.13 +0.6
1,128,027 - RR42_RS25800 0.13 +0.4
1,128,083 + RR42_RS25800 0.18 -1.0
1,128,090 + RR42_RS25800 0.19 +1.3
1,128,172 + RR42_RS25800 0.27 -0.4
1,128,172 + RR42_RS25800 0.27 -0.6
1,128,173 - RR42_RS25800 0.27 +1.0
1,128,188 + RR42_RS25800 0.28 +0.5
1,128,189 - RR42_RS25800 0.28 +0.6
1,128,330 + RR42_RS25800 0.41 -0.6
1,128,392 + RR42_RS25800 0.47 -0.6
1,128,392 + RR42_RS25800 0.47 -0.1
1,128,393 - RR42_RS25800 0.47 -1.4
1,128,393 - RR42_RS25800 0.47 +0.9
1,128,393 - RR42_RS25800 0.47 +1.7
1,128,393 - RR42_RS25800 0.47 +1.4
1,128,409 - RR42_RS25800 0.49 -1.6
1,128,409 - RR42_RS25800 0.49 -1.8
1,128,409 - RR42_RS25800 0.49 +0.2
1,128,411 - RR42_RS25800 0.49 +0.7
1,128,411 - RR42_RS25800 0.49 -0.8
1,128,411 - RR42_RS25800 0.49 +0.8

Or see this region's nucleotide sequence