Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25170 and RR42_RS25175 are separated by 208 nucleotides RR42_RS25175 and RR42_RS25180 are separated by 457 nucleotides
RR42_RS25170: RR42_RS25170 - hypothetical protein, at 987,318 to 987,689
_RS25170
RR42_RS25175: RR42_RS25175 - 3-keto-5-aminohexanoate cleavage protein, at 987,898 to 988,821
_RS25175
RR42_RS25180: RR42_RS25180 - AraC family transcriptional regulator, at 989,279 to 990,148
_RS25180
Position (kb) 987
988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 987.017 kb on + strand at 987.038 kb on + strand at 987.039 kb on - strand at 987.039 kb on - strand at 987.039 kb on - strand at 987.145 kb on - strand at 987.145 kb on - strand at 987.149 kb on - strand at 987.731 kb on + strand at 987.732 kb on - strand at 987.853 kb on - strand at 987.897 kb on + strand at 987.897 kb on + strand at 987.897 kb on + strand at 987.898 kb on - strand at 987.903 kb on + strand at 987.904 kb on - strand at 987.943 kb on - strand at 987.962 kb on - strand at 987.962 kb on - strand at 987.962 kb on - strand at 987.966 kb on - strand at 988.159 kb on + strand, within RR42_RS25175 at 988.160 kb on - strand, within RR42_RS25175 at 988.348 kb on - strand, within RR42_RS25175 at 988.348 kb on - strand, within RR42_RS25175 at 988.405 kb on + strand, within RR42_RS25175 at 988.406 kb on - strand, within RR42_RS25175 at 988.406 kb on - strand, within RR42_RS25175 at 988.423 kb on + strand, within RR42_RS25175 at 989.100 kb on + strand at 989.129 kb on + strand at 989.293 kb on - strand at 989.319 kb on + strand at 989.568 kb on + strand, within RR42_RS25180 at 989.586 kb on - strand, within RR42_RS25180 at 989.694 kb on + strand, within RR42_RS25180 at 989.727 kb on - strand, within RR42_RS25180 at 989.727 kb on - strand, within RR42_RS25180
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 987,017 + +0.4 987,038 + +1.3 987,039 - +0.1 987,039 - +0.6 987,039 - +1.1 987,145 - +0.6 987,145 - +0.6 987,149 - -0.7 987,731 + +0.1 987,732 - +1.0 987,853 - -0.6 987,897 + -0.7 987,897 + -0.5 987,897 + +0.1 987,898 - -0.2 987,903 + +0.3 987,904 - -0.9 987,943 - -2.2 987,962 - +2.9 987,962 - -1.0 987,962 - -1.4 987,966 - -1.8 988,159 + RR42_RS25175 0.28 +0.8 988,160 - RR42_RS25175 0.28 +0.8 988,348 - RR42_RS25175 0.49 +0.2 988,348 - RR42_RS25175 0.49 -0.6 988,405 + RR42_RS25175 0.55 +1.1 988,406 - RR42_RS25175 0.55 +0.1 988,406 - RR42_RS25175 0.55 -0.1 988,423 + RR42_RS25175 0.57 -1.7 989,100 + -3.2 989,129 + +0.7 989,293 - -0.2 989,319 + +0.2 989,568 + RR42_RS25180 0.33 -0.5 989,586 - RR42_RS25180 0.35 -0.2 989,694 + RR42_RS25180 0.48 -0.4 989,727 - RR42_RS25180 0.51 +0.1 989,727 - RR42_RS25180 0.51 +0.0
Or see this region's nucleotide sequence