Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24615 and RR42_RS24620 are separated by 196 nucleotides RR42_RS24620 and RR42_RS24625 are separated by 38 nucleotides RR42_RS24625 and RR42_RS24630 are separated by 35 nucleotides
RR42_RS24615: RR42_RS24615 - phytanoyl-CoA dioxygenase, at 859,181 to 860,059
_RS24615
RR42_RS24620: RR42_RS24620 - amine oxidase, at 860,256 to 861,752
_RS24620
RR42_RS24625: RR42_RS24625 - hypothetical protein, at 861,791 to 862,432
_RS24625
RR42_RS24630: RR42_RS24630 - amine oxidase, at 862,468 to 863,964
_RS24630
Position (kb) 860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 859.349 kb on + strand, within RR42_RS24615 at 859.350 kb on - strand, within RR42_RS24615 at 859.406 kb on - strand, within RR42_RS24615 at 859.433 kb on + strand, within RR42_RS24615 at 859.434 kb on - strand, within RR42_RS24615 at 859.817 kb on - strand, within RR42_RS24615 at 859.822 kb on + strand, within RR42_RS24615 at 859.823 kb on - strand, within RR42_RS24615 at 859.823 kb on - strand, within RR42_RS24615 at 859.887 kb on - strand, within RR42_RS24615 at 859.967 kb on + strand, within RR42_RS24615 at 859.967 kb on + strand, within RR42_RS24615 at 859.967 kb on + strand, within RR42_RS24615 at 859.967 kb on + strand, within RR42_RS24615 at 859.967 kb on + strand, within RR42_RS24615 at 860.216 kb on - strand at 860.651 kb on - strand, within RR42_RS24620 at 860.655 kb on + strand, within RR42_RS24620 at 860.655 kb on + strand, within RR42_RS24620 at 860.656 kb on - strand, within RR42_RS24620 at 860.909 kb on + strand, within RR42_RS24620 at 860.926 kb on + strand, within RR42_RS24620 at 860.940 kb on + strand, within RR42_RS24620 at 860.940 kb on + strand, within RR42_RS24620 at 860.941 kb on - strand, within RR42_RS24620 at 861.264 kb on + strand, within RR42_RS24620 at 861.265 kb on - strand, within RR42_RS24620 at 861.294 kb on + strand, within RR42_RS24620 at 861.294 kb on + strand, within RR42_RS24620 at 861.295 kb on - strand, within RR42_RS24620 at 861.477 kb on + strand, within RR42_RS24620 at 861.477 kb on + strand, within RR42_RS24620 at 861.477 kb on + strand, within RR42_RS24620 at 861.478 kb on - strand, within RR42_RS24620 at 861.478 kb on - strand, within RR42_RS24620 at 861.478 kb on - strand, within RR42_RS24620 at 861.478 kb on - strand, within RR42_RS24620 at 861.600 kb on + strand, within RR42_RS24620 at 861.648 kb on - strand at 861.672 kb on - strand at 861.691 kb on + strand at 861.691 kb on + strand at 861.849 kb on - strand at 861.864 kb on - strand, within RR42_RS24625 at 861.971 kb on + strand, within RR42_RS24625 at 861.972 kb on - strand, within RR42_RS24625 at 862.028 kb on + strand, within RR42_RS24625 at 862.029 kb on - strand, within RR42_RS24625 at 862.271 kb on + strand, within RR42_RS24625 at 862.369 kb on - strand at 862.476 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 859,349 + RR42_RS24615 0.19 +0.4 859,350 - RR42_RS24615 0.19 -2.1 859,406 - RR42_RS24615 0.26 +1.9 859,433 + RR42_RS24615 0.29 -2.5 859,434 - RR42_RS24615 0.29 +0.1 859,817 - RR42_RS24615 0.72 +0.9 859,822 + RR42_RS24615 0.73 +1.8 859,823 - RR42_RS24615 0.73 +0.3 859,823 - RR42_RS24615 0.73 +0.7 859,887 - RR42_RS24615 0.80 -3.2 859,967 + RR42_RS24615 0.89 -2.0 859,967 + RR42_RS24615 0.89 -0.9 859,967 + RR42_RS24615 0.89 +0.4 859,967 + RR42_RS24615 0.89 +0.9 859,967 + RR42_RS24615 0.89 +0.5 860,216 - +1.0 860,651 - RR42_RS24620 0.26 +1.4 860,655 + RR42_RS24620 0.27 -3.0 860,655 + RR42_RS24620 0.27 +0.9 860,656 - RR42_RS24620 0.27 +2.2 860,909 + RR42_RS24620 0.44 -0.2 860,926 + RR42_RS24620 0.45 +1.1 860,940 + RR42_RS24620 0.46 -0.0 860,940 + RR42_RS24620 0.46 -0.2 860,941 - RR42_RS24620 0.46 +0.6 861,264 + RR42_RS24620 0.67 -3.4 861,265 - RR42_RS24620 0.67 +0.7 861,294 + RR42_RS24620 0.69 +1.1 861,294 + RR42_RS24620 0.69 +1.9 861,295 - RR42_RS24620 0.69 -1.5 861,477 + RR42_RS24620 0.82 -2.2 861,477 + RR42_RS24620 0.82 -1.0 861,477 + RR42_RS24620 0.82 +0.8 861,478 - RR42_RS24620 0.82 +0.2 861,478 - RR42_RS24620 0.82 -0.8 861,478 - RR42_RS24620 0.82 -0.1 861,478 - RR42_RS24620 0.82 -0.7 861,600 + RR42_RS24620 0.90 +0.6 861,648 - +0.8 861,672 - -1.9 861,691 + -0.8 861,691 + -0.6 861,849 - -2.5 861,864 - RR42_RS24625 0.11 -0.8 861,971 + RR42_RS24625 0.28 +0.8 861,972 - RR42_RS24625 0.28 -0.7 862,028 + RR42_RS24625 0.37 -1.1 862,029 - RR42_RS24625 0.37 +0.6 862,271 + RR42_RS24625 0.75 +1.0 862,369 - +0.6 862,476 + +0.3
Or see this region's nucleotide sequence