Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24545 and RR42_RS24550 are separated by 714 nucleotides RR42_RS24550 and RR42_RS24555 are separated by 818 nucleotides
RR42_RS24545: RR42_RS24545 - hypothetical protein, at 837,567 to 839,207
_RS24545
RR42_RS24550: RR42_RS24550 - hypothetical protein, at 839,922 to 840,104
_RS24550
RR42_RS24555: RR42_RS24555 - succinate-semialdehyde dehydrogenase, at 840,923 to 842,407
_RS24555
Position (kb) 839
840
841 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 838.937 kb on + strand, within RR42_RS24545 at 838.937 kb on + strand, within RR42_RS24545 at 838.938 kb on - strand, within RR42_RS24545 at 838.938 kb on - strand, within RR42_RS24545 at 839.114 kb on - strand at 839.365 kb on + strand at 839.365 kb on + strand at 839.894 kb on + strand at 839.895 kb on - strand at 839.971 kb on - strand, within RR42_RS24550 at 840.064 kb on - strand, within RR42_RS24550 at 840.092 kb on + strand at 840.217 kb on - strand at 840.226 kb on - strand at 840.256 kb on + strand at 840.257 kb on - strand at 840.280 kb on + strand at 840.280 kb on + strand at 840.296 kb on - strand at 840.302 kb on + strand at 840.345 kb on + strand at 840.366 kb on + strand at 840.366 kb on + strand at 840.366 kb on + strand at 840.367 kb on - strand at 840.370 kb on - strand at 840.464 kb on + strand at 840.465 kb on - strand at 840.544 kb on - strand at 840.590 kb on + strand at 840.739 kb on + strand at 840.739 kb on + strand at 840.740 kb on - strand at 840.796 kb on + strand at 840.796 kb on + strand at 840.796 kb on + strand at 840.797 kb on - strand at 840.797 kb on - strand at 840.797 kb on - strand at 840.797 kb on - strand at 840.797 kb on - strand at 840.844 kb on - strand at 840.844 kb on - strand at 840.864 kb on + strand at 840.864 kb on + strand at 840.865 kb on - strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.866 kb on + strand at 840.867 kb on - strand at 840.867 kb on - strand at 840.867 kb on - strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.907 kb on + strand at 840.908 kb on - strand at 840.908 kb on - strand at 840.908 kb on - strand at 840.922 kb on - strand at 840.922 kb on - strand at 840.935 kb on - strand at 840.946 kb on + strand at 840.947 kb on - strand at 840.947 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 838,937 + RR42_RS24545 0.83 +0.3 838,937 + RR42_RS24545 0.83 -1.0 838,938 - RR42_RS24545 0.84 -0.2 838,938 - RR42_RS24545 0.84 +1.6 839,114 - -2.3 839,365 + -0.2 839,365 + +1.3 839,894 + +0.7 839,895 - -2.5 839,971 - RR42_RS24550 0.27 +1.1 840,064 - RR42_RS24550 0.78 -1.3 840,092 + -0.4 840,217 - -0.7 840,226 - +0.5 840,256 + +1.1 840,257 - +0.5 840,280 + -1.5 840,280 + -1.2 840,296 - -0.3 840,302 + -0.1 840,345 + +0.3 840,366 + +0.3 840,366 + -1.6 840,366 + +0.2 840,367 - -2.1 840,370 - +0.5 840,464 + -1.4 840,465 - +0.1 840,544 - -3.1 840,590 + +0.1 840,739 + -0.6 840,739 + -1.1 840,740 - -1.0 840,796 + +0.1 840,796 + +1.7 840,796 + -0.6 840,797 - -2.2 840,797 - -0.5 840,797 - -1.9 840,797 - -0.5 840,797 - +0.3 840,844 - -0.8 840,844 - -0.9 840,864 + +0.0 840,864 + -0.2 840,865 - +0.4 840,866 + -1.9 840,866 + -2.7 840,866 + -0.0 840,866 + -0.0 840,866 + -0.1 840,866 + +0.1 840,867 - +0.4 840,867 - -0.4 840,867 - +0.0 840,907 + +1.1 840,907 + +0.7 840,907 + -1.2 840,907 + -2.3 840,907 + +0.0 840,907 + -0.5 840,907 + -1.6 840,908 - +1.1 840,908 - +0.4 840,908 - -0.3 840,922 - -2.4 840,922 - +0.8 840,935 - -0.5 840,946 + +0.6 840,947 - +1.7 840,947 - -0.1
Or see this region's nucleotide sequence