Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24140 and RR42_RS24145 are separated by 200 nucleotides RR42_RS24145 and RR42_RS24150 are separated by 14 nucleotides RR42_RS24150 and RR42_RS24155 are separated by 35 nucleotides
RR42_RS24140: RR42_RS24140 - hypothetical protein, at 742,145 to 743,056
_RS24140
RR42_RS24145: RR42_RS24145 - hypothetical protein, at 743,257 to 744,894
_RS24145
RR42_RS24150: RR42_RS24150 - thioesterase, at 744,909 to 745,316
_RS24150
RR42_RS24155: RR42_RS24155 - monooxygenase, at 745,352 to 746,494
_RS24155
Position (kb) 743
744
745 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 742.292 kb on + strand, within RR42_RS24140 at 742.293 kb on - strand, within RR42_RS24140 at 742.484 kb on + strand, within RR42_RS24140 at 742.570 kb on + strand, within RR42_RS24140 at 742.572 kb on + strand, within RR42_RS24140 at 742.820 kb on + strand, within RR42_RS24140 at 742.820 kb on + strand, within RR42_RS24140 at 742.821 kb on - strand, within RR42_RS24140 at 742.839 kb on - strand, within RR42_RS24140 at 742.905 kb on - strand, within RR42_RS24140 at 743.018 kb on - strand at 743.068 kb on - strand at 743.068 kb on - strand at 743.082 kb on + strand at 743.083 kb on - strand at 743.086 kb on - strand at 743.086 kb on - strand at 743.091 kb on + strand at 743.114 kb on + strand at 743.272 kb on + strand at 743.272 kb on + strand at 743.272 kb on + strand at 743.273 kb on - strand at 743.273 kb on - strand at 743.273 kb on - strand at 743.273 kb on - strand at 743.273 kb on - strand at 743.297 kb on - strand at 743.299 kb on + strand at 743.299 kb on + strand at 743.300 kb on - strand at 743.463 kb on - strand, within RR42_RS24145 at 743.629 kb on + strand, within RR42_RS24145 at 743.629 kb on + strand, within RR42_RS24145 at 743.629 kb on + strand, within RR42_RS24145 at 743.630 kb on - strand, within RR42_RS24145 at 743.715 kb on + strand, within RR42_RS24145 at 743.716 kb on - strand, within RR42_RS24145 at 743.800 kb on - strand, within RR42_RS24145 at 743.828 kb on + strand, within RR42_RS24145 at 743.828 kb on + strand, within RR42_RS24145 at 743.828 kb on + strand, within RR42_RS24145 at 743.828 kb on + strand, within RR42_RS24145 at 743.829 kb on - strand, within RR42_RS24145 at 743.829 kb on - strand, within RR42_RS24145 at 743.829 kb on - strand, within RR42_RS24145 at 743.929 kb on + strand, within RR42_RS24145 at 743.929 kb on + strand, within RR42_RS24145 at 743.930 kb on - strand, within RR42_RS24145 at 743.930 kb on - strand, within RR42_RS24145 at 744.064 kb on + strand, within RR42_RS24145 at 744.314 kb on + strand, within RR42_RS24145 at 744.315 kb on - strand, within RR42_RS24145 at 744.378 kb on - strand, within RR42_RS24145 at 744.437 kb on - strand, within RR42_RS24145 at 744.608 kb on - strand, within RR42_RS24145 at 744.608 kb on - strand, within RR42_RS24145 at 744.642 kb on + strand, within RR42_RS24145 at 744.642 kb on + strand, within RR42_RS24145 at 744.745 kb on + strand at 744.746 kb on - strand at 744.887 kb on + strand at 744.888 kb on - strand at 744.888 kb on - strand at 744.914 kb on + strand at 744.915 kb on - strand at 744.919 kb on - strand at 744.919 kb on - strand at 744.924 kb on + strand at 744.985 kb on - strand, within RR42_RS24150 at 744.985 kb on - strand, within RR42_RS24150 at 745.108 kb on + strand at 745.119 kb on - strand, within RR42_RS24150 at 745.132 kb on - strand, within RR42_RS24150 at 745.136 kb on - strand, within RR42_RS24150 at 745.136 kb on - strand, within RR42_RS24150 at 745.136 kb on - strand, within RR42_RS24150 at 745.250 kb on - strand, within RR42_RS24150 at 745.336 kb on + strand at 745.363 kb on + strand at 745.363 kb on + strand at 745.363 kb on + strand at 745.368 kb on + strand at 745.391 kb on + strand at 745.442 kb on + strand at 745.443 kb on - strand at 745.443 kb on - strand at 745.659 kb on + strand, within RR42_RS24155 at 745.681 kb on - strand, within RR42_RS24155 at 745.689 kb on + strand, within RR42_RS24155 at 745.689 kb on + strand, within RR42_RS24155 at 745.817 kb on + strand, within RR42_RS24155 at 745.817 kb on + strand, within RR42_RS24155 at 745.882 kb on + strand, within RR42_RS24155 at 745.882 kb on + strand, within RR42_RS24155 at 745.882 kb on + strand, within RR42_RS24155 at 745.883 kb on - strand, within RR42_RS24155 at 745.891 kb on - strand, within RR42_RS24155
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 742,292 + RR42_RS24140 0.16 +1.1 742,293 - RR42_RS24140 0.16 +0.8 742,484 + RR42_RS24140 0.37 -0.9 742,570 + RR42_RS24140 0.47 +1.2 742,572 + RR42_RS24140 0.47 -2.9 742,820 + RR42_RS24140 0.74 +1.0 742,820 + RR42_RS24140 0.74 -1.5 742,821 - RR42_RS24140 0.74 +0.0 742,839 - RR42_RS24140 0.76 +1.1 742,905 - RR42_RS24140 0.83 +0.9 743,018 - +0.6 743,068 - -0.1 743,068 - -2.2 743,082 + +0.2 743,083 - -0.7 743,086 - -0.5 743,086 - -1.5 743,091 + +0.5 743,114 + -0.2 743,272 + +1.2 743,272 + +0.8 743,272 + +0.3 743,273 - +1.4 743,273 - +0.5 743,273 - +0.6 743,273 - -0.6 743,273 - -1.0 743,297 - +0.3 743,299 + +0.3 743,299 + +0.2 743,300 - -0.3 743,463 - RR42_RS24145 0.13 -0.3 743,629 + RR42_RS24145 0.23 -0.5 743,629 + RR42_RS24145 0.23 +0.6 743,629 + RR42_RS24145 0.23 +1.3 743,630 - RR42_RS24145 0.23 +1.1 743,715 + RR42_RS24145 0.28 +0.5 743,716 - RR42_RS24145 0.28 -0.1 743,800 - RR42_RS24145 0.33 -0.8 743,828 + RR42_RS24145 0.35 -0.3 743,828 + RR42_RS24145 0.35 -1.2 743,828 + RR42_RS24145 0.35 -0.5 743,828 + RR42_RS24145 0.35 -0.3 743,829 - RR42_RS24145 0.35 +0.5 743,829 - RR42_RS24145 0.35 +0.7 743,829 - RR42_RS24145 0.35 -0.5 743,929 + RR42_RS24145 0.41 -1.5 743,929 + RR42_RS24145 0.41 -1.0 743,930 - RR42_RS24145 0.41 -1.0 743,930 - RR42_RS24145 0.41 +1.0 744,064 + RR42_RS24145 0.49 -1.5 744,314 + RR42_RS24145 0.65 -0.3 744,315 - RR42_RS24145 0.65 +0.5 744,378 - RR42_RS24145 0.68 -0.6 744,437 - RR42_RS24145 0.72 +0.4 744,608 - RR42_RS24145 0.82 -1.5 744,608 - RR42_RS24145 0.82 -1.2 744,642 + RR42_RS24145 0.85 +1.0 744,642 + RR42_RS24145 0.85 -0.1 744,745 + +2.1 744,746 - -0.3 744,887 + +0.6 744,888 - +0.1 744,888 - +0.9 744,914 + +0.3 744,915 - +0.2 744,919 - -2.2 744,919 - -0.4 744,924 + +0.3 744,985 - RR42_RS24150 0.19 +0.5 744,985 - RR42_RS24150 0.19 +0.4 745,108 + +2.9 745,119 - RR42_RS24150 0.51 +0.3 745,132 - RR42_RS24150 0.55 -0.2 745,136 - RR42_RS24150 0.56 -1.2 745,136 - RR42_RS24150 0.56 -2.2 745,136 - RR42_RS24150 0.56 +0.8 745,250 - RR42_RS24150 0.84 +0.7 745,336 + -0.5 745,363 + -0.1 745,363 + -0.5 745,363 + -1.1 745,368 + -2.9 745,391 + +2.1 745,442 + +1.1 745,443 - +0.3 745,443 - +0.9 745,659 + RR42_RS24155 0.27 +0.5 745,681 - RR42_RS24155 0.29 -0.3 745,689 + RR42_RS24155 0.29 -1.0 745,689 + RR42_RS24155 0.29 +0.6 745,817 + RR42_RS24155 0.41 -1.9 745,817 + RR42_RS24155 0.41 -3.2 745,882 + RR42_RS24155 0.46 -1.8 745,882 + RR42_RS24155 0.46 -3.2 745,882 + RR42_RS24155 0.46 +0.2 745,883 - RR42_RS24155 0.46 +0.1 745,891 - RR42_RS24155 0.47 +1.9
Or see this region's nucleotide sequence