Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23985 and RR42_RS23990 are separated by 550 nucleotides RR42_RS23990 and RR42_RS23995 are separated by 485 nucleotides
RR42_RS23985: RR42_RS23985 - hypothetical protein, at 707,225 to 707,740
_RS23985
RR42_RS23990: RR42_RS23990 - hypothetical protein, at 708,291 to 708,755
_RS23990
RR42_RS23995: RR42_RS23995 - hypothetical protein, at 709,241 to 709,486
_RS23995
Position (kb) 708
709 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 707.318 kb on + strand, within RR42_RS23985 at 707.318 kb on + strand, within RR42_RS23985 at 707.330 kb on + strand, within RR42_RS23985 at 707.331 kb on - strand, within RR42_RS23985 at 707.480 kb on - strand, within RR42_RS23985 at 707.812 kb on + strand at 707.813 kb on - strand at 707.813 kb on - strand at 707.849 kb on + strand at 707.849 kb on + strand at 708.040 kb on + strand at 708.040 kb on + strand at 708.040 kb on + strand at 708.064 kb on + strand at 708.065 kb on - strand at 708.085 kb on + strand at 708.128 kb on + strand at 708.140 kb on + strand at 708.140 kb on + strand at 708.140 kb on + strand at 708.141 kb on - strand at 708.141 kb on - strand at 708.141 kb on - strand at 708.196 kb on + strand at 708.196 kb on + strand at 708.196 kb on + strand at 708.196 kb on + strand at 708.196 kb on + strand at 708.197 kb on - strand at 708.197 kb on - strand at 708.197 kb on - strand at 708.197 kb on - strand at 708.261 kb on + strand at 708.262 kb on - strand at 708.271 kb on + strand at 708.271 kb on + strand at 708.272 kb on - strand at 708.272 kb on - strand at 708.294 kb on + strand at 708.294 kb on + strand at 708.295 kb on - strand at 708.295 kb on - strand at 708.295 kb on - strand at 708.295 kb on - strand at 708.314 kb on + strand at 708.455 kb on + strand, within RR42_RS23990 at 708.484 kb on + strand, within RR42_RS23990 at 708.484 kb on + strand, within RR42_RS23990 at 708.484 kb on + strand, within RR42_RS23990 at 708.485 kb on - strand, within RR42_RS23990 at 708.525 kb on + strand, within RR42_RS23990 at 708.526 kb on - strand, within RR42_RS23990 at 708.559 kb on - strand, within RR42_RS23990 at 708.559 kb on - strand, within RR42_RS23990 at 708.593 kb on + strand, within RR42_RS23990 at 708.678 kb on - strand, within RR42_RS23990 at 708.775 kb on - strand at 708.978 kb on + strand at 708.984 kb on + strand at 708.985 kb on - strand at 709.058 kb on - strand at 709.177 kb on + strand at 709.177 kb on + strand at 709.178 kb on - strand at 709.223 kb on + strand at 709.279 kb on - strand, within RR42_RS23995 at 709.295 kb on + strand, within RR42_RS23995 at 709.295 kb on + strand, within RR42_RS23995 at 709.337 kb on + strand, within RR42_RS23995 at 709.337 kb on + strand, within RR42_RS23995 at 709.567 kb on + strand at 709.568 kb on - strand at 709.655 kb on + strand at 709.707 kb on - strand at 709.742 kb on + strand at 709.743 kb on - strand at 709.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 707,318 + RR42_RS23985 0.18 +0.6 707,318 + RR42_RS23985 0.18 -3.5 707,330 + RR42_RS23985 0.20 +1.5 707,331 - RR42_RS23985 0.21 +0.8 707,480 - RR42_RS23985 0.49 +0.5 707,812 + -1.2 707,813 - +0.7 707,813 - -0.5 707,849 + -0.0 707,849 + +0.1 708,040 + -0.3 708,040 + +0.4 708,040 + -1.0 708,064 + -2.4 708,065 - +1.6 708,085 + +0.1 708,128 + +0.2 708,140 + +0.3 708,140 + +1.1 708,140 + -0.9 708,141 - -1.2 708,141 - +0.1 708,141 - +0.4 708,196 + +0.6 708,196 + -0.4 708,196 + -1.1 708,196 + -0.1 708,196 + +0.7 708,197 - +0.1 708,197 - +1.1 708,197 - +0.1 708,197 - +0.3 708,261 + +0.5 708,262 - +0.8 708,271 + +0.3 708,271 + -0.8 708,272 - +0.7 708,272 - -0.4 708,294 + -1.2 708,294 + +1.0 708,295 - +0.5 708,295 - +0.5 708,295 - -0.5 708,295 - -1.3 708,314 + +0.4 708,455 + RR42_RS23990 0.35 -0.4 708,484 + RR42_RS23990 0.42 -1.1 708,484 + RR42_RS23990 0.42 -0.5 708,484 + RR42_RS23990 0.42 +1.1 708,485 - RR42_RS23990 0.42 +1.5 708,525 + RR42_RS23990 0.50 -1.8 708,526 - RR42_RS23990 0.51 +0.6 708,559 - RR42_RS23990 0.58 +0.1 708,559 - RR42_RS23990 0.58 -0.7 708,593 + RR42_RS23990 0.65 -0.4 708,678 - RR42_RS23990 0.83 +0.2 708,775 - -1.0 708,978 + -2.7 708,984 + -1.9 708,985 - -1.5 709,058 - +0.4 709,177 + -0.6 709,177 + -2.0 709,178 - -2.8 709,223 + -2.8 709,279 - RR42_RS23995 0.15 -0.9 709,295 + RR42_RS23995 0.22 -3.1 709,295 + RR42_RS23995 0.22 +0.8 709,337 + RR42_RS23995 0.39 -0.0 709,337 + RR42_RS23995 0.39 -1.2 709,567 + -0.7 709,568 - +0.3 709,655 + +1.2 709,707 - -1.0 709,742 + +0.4 709,743 - -0.1 709,753 - -0.2
Or see this region's nucleotide sequence