Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23725 and RR42_RS23730 are separated by 13 nucleotides RR42_RS23730 and RR42_RS23735 are separated by 15 nucleotides RR42_RS23735 and RR42_RS23740 are separated by 6 nucleotides
RR42_RS23725: RR42_RS23725 - phenylacetate-CoA oxygenase, at 648,557 to 649,561
_RS23725
RR42_RS23730: RR42_RS23730 - phenylacetate-CoA oxygenase subunit PaaB, at 649,575 to 649,859
_RS23730
RR42_RS23735: RR42_RS23735 - phenylacetyl-CoA 1,2-epoxidase, structural subunit (EC 1.14.13.149) <small>(from data)</small>, at 649,875 to 650,675
_RS23735
RR42_RS23740: RR42_RS23740 - phenylacetate-CoA oxygenase, at 650,682 to 651,248
_RS23740
Position (kb) 649
650 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 648.701 kb on + strand, within RR42_RS23725 at 648.702 kb on - strand, within RR42_RS23725 at 648.702 kb on - strand, within RR42_RS23725 at 648.854 kb on + strand, within RR42_RS23725 at 648.855 kb on - strand, within RR42_RS23725 at 648.855 kb on - strand, within RR42_RS23725 at 648.861 kb on - strand, within RR42_RS23725 at 648.932 kb on + strand, within RR42_RS23725 at 648.932 kb on + strand, within RR42_RS23725 at 648.933 kb on - strand, within RR42_RS23725 at 649.043 kb on + strand, within RR42_RS23725 at 649.043 kb on + strand, within RR42_RS23725 at 649.388 kb on + strand, within RR42_RS23725 at 649.388 kb on + strand, within RR42_RS23725 at 649.614 kb on - strand, within RR42_RS23730 at 649.698 kb on + strand, within RR42_RS23730 at 649.699 kb on - strand, within RR42_RS23730 at 649.699 kb on - strand, within RR42_RS23730 at 649.857 kb on + strand at 649.857 kb on + strand at 649.857 kb on + strand at 649.858 kb on - strand at 649.858 kb on - strand at 649.928 kb on + strand at 649.987 kb on + strand, within RR42_RS23735 at 649.987 kb on + strand, within RR42_RS23735 at 650.038 kb on - strand, within RR42_RS23735 at 650.038 kb on - strand, within RR42_RS23735 at 650.097 kb on + strand, within RR42_RS23735 at 650.097 kb on + strand, within RR42_RS23735 at 650.133 kb on + strand, within RR42_RS23735 at 650.133 kb on + strand, within RR42_RS23735 at 650.133 kb on + strand, within RR42_RS23735 at 650.133 kb on + strand, within RR42_RS23735 at 650.134 kb on - strand, within RR42_RS23735 at 650.134 kb on - strand, within RR42_RS23735 at 650.196 kb on + strand, within RR42_RS23735 at 650.197 kb on - strand, within RR42_RS23735 at 650.197 kb on - strand, within RR42_RS23735 at 650.226 kb on + strand, within RR42_RS23735 at 650.226 kb on + strand, within RR42_RS23735 at 650.410 kb on - strand, within RR42_RS23735 at 650.620 kb on - strand at 650.673 kb on + strand at 650.856 kb on + strand, within RR42_RS23740
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 648,701 + RR42_RS23725 0.14 +0.2 648,702 - RR42_RS23725 0.14 -2.1 648,702 - RR42_RS23725 0.14 -0.9 648,854 + RR42_RS23725 0.30 +0.2 648,855 - RR42_RS23725 0.30 +0.4 648,855 - RR42_RS23725 0.30 +1.9 648,861 - RR42_RS23725 0.30 -1.1 648,932 + RR42_RS23725 0.37 -0.8 648,932 + RR42_RS23725 0.37 -2.4 648,933 - RR42_RS23725 0.37 -0.3 649,043 + RR42_RS23725 0.48 -1.6 649,043 + RR42_RS23725 0.48 -0.4 649,388 + RR42_RS23725 0.83 -0.4 649,388 + RR42_RS23725 0.83 -1.0 649,614 - RR42_RS23730 0.14 +1.0 649,698 + RR42_RS23730 0.43 -0.5 649,699 - RR42_RS23730 0.44 -1.5 649,699 - RR42_RS23730 0.44 +2.2 649,857 + +0.2 649,857 + +0.4 649,857 + -0.3 649,858 - +0.3 649,858 - -0.8 649,928 + -0.2 649,987 + RR42_RS23735 0.14 -2.2 649,987 + RR42_RS23735 0.14 -0.6 650,038 - RR42_RS23735 0.20 +0.7 650,038 - RR42_RS23735 0.20 -0.8 650,097 + RR42_RS23735 0.28 +0.9 650,097 + RR42_RS23735 0.28 +0.2 650,133 + RR42_RS23735 0.32 -0.6 650,133 + RR42_RS23735 0.32 -3.2 650,133 + RR42_RS23735 0.32 -0.3 650,133 + RR42_RS23735 0.32 -0.3 650,134 - RR42_RS23735 0.32 -0.9 650,134 - RR42_RS23735 0.32 +0.4 650,196 + RR42_RS23735 0.40 -0.0 650,197 - RR42_RS23735 0.40 -0.7 650,197 - RR42_RS23735 0.40 -0.5 650,226 + RR42_RS23735 0.44 -0.4 650,226 + RR42_RS23735 0.44 -0.6 650,410 - RR42_RS23735 0.67 -0.6 650,620 - +1.2 650,673 + +0.9 650,856 + RR42_RS23740 0.31 +3.5
Or see this region's nucleotide sequence