Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23410

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23405 and RR42_RS23410 are separated by 236 nucleotidesRR42_RS23410 and RR42_RS23415 are separated by 225 nucleotidesRR42_RS23415 and RR42_RS23420 are separated by 54 nucleotides RR42_RS23405: RR42_RS23405 - hypothetical protein, at 578,619 to 579,512 _RS23405 RR42_RS23410: RR42_RS23410 - hypothetical protein, at 579,749 to 580,648 _RS23410 RR42_RS23415: RR42_RS23415 - 4-carboxymuconolactone decarboxylase, at 580,874 to 581,428 _RS23415 RR42_RS23420: RR42_RS23420 - 3-oxoacyl-ACP reductase, at 581,483 to 582,283 _RS23420 Position (kb) 579 580 581Strain fitness (log2 ratio) -2 -1 0 1 2at 578.750 kb on - strand, within RR42_RS23405at 578.837 kb on + strand, within RR42_RS23405at 578.838 kb on - strand, within RR42_RS23405at 578.876 kb on - strand, within RR42_RS23405at 578.924 kb on + strand, within RR42_RS23405at 579.201 kb on + strand, within RR42_RS23405at 579.202 kb on - strand, within RR42_RS23405at 579.327 kb on + strand, within RR42_RS23405at 579.327 kb on + strand, within RR42_RS23405at 579.328 kb on - strand, within RR42_RS23405at 579.328 kb on - strand, within RR42_RS23405at 579.700 kb on + strandat 579.700 kb on + strandat 579.751 kb on - strandat 579.756 kb on - strandat 579.870 kb on - strand, within RR42_RS23410at 579.947 kb on + strand, within RR42_RS23410at 579.981 kb on + strand, within RR42_RS23410at 580.041 kb on + strand, within RR42_RS23410at 580.041 kb on + strand, within RR42_RS23410at 580.042 kb on - strand, within RR42_RS23410at 580.202 kb on + strand, within RR42_RS23410at 580.202 kb on + strand, within RR42_RS23410at 580.203 kb on - strand, within RR42_RS23410at 580.338 kb on + strand, within RR42_RS23410at 580.338 kb on + strand, within RR42_RS23410at 580.486 kb on + strand, within RR42_RS23410at 580.697 kb on - strandat 580.727 kb on + strandat 580.728 kb on - strandat 580.728 kb on - strandat 580.762 kb on + strandat 580.965 kb on + strand, within RR42_RS23415at 580.965 kb on + strand, within RR42_RS23415at 580.965 kb on + strand, within RR42_RS23415at 581.033 kb on + strand, within RR42_RS23415at 581.034 kb on - strand, within RR42_RS23415at 581.034 kb on - strand, within RR42_RS23415at 581.243 kb on - strand, within RR42_RS23415at 581.282 kb on + strand, within RR42_RS23415at 581.282 kb on + strand, within RR42_RS23415at 581.283 kb on - strand, within RR42_RS23415at 581.322 kb on + strand, within RR42_RS23415at 581.348 kb on + strand, within RR42_RS23415at 581.476 kb on - strandat 581.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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578,750 - RR42_RS23405 0.15 -0.2
578,837 + RR42_RS23405 0.24 +0.3
578,838 - RR42_RS23405 0.24 +0.1
578,876 - RR42_RS23405 0.29 +1.0
578,924 + RR42_RS23405 0.34 -0.8
579,201 + RR42_RS23405 0.65 +1.2
579,202 - RR42_RS23405 0.65 +0.7
579,327 + RR42_RS23405 0.79 +0.5
579,327 + RR42_RS23405 0.79 -0.3
579,328 - RR42_RS23405 0.79 +0.8
579,328 - RR42_RS23405 0.79 -0.6
579,700 + -0.3
579,700 + +0.1
579,751 - +1.1
579,756 - +0.9
579,870 - RR42_RS23410 0.13 -1.6
579,947 + RR42_RS23410 0.22 +2.2
579,981 + RR42_RS23410 0.26 +0.4
580,041 + RR42_RS23410 0.32 +0.2
580,041 + RR42_RS23410 0.32 +0.8
580,042 - RR42_RS23410 0.33 -0.1
580,202 + RR42_RS23410 0.50 -0.2
580,202 + RR42_RS23410 0.50 -1.2
580,203 - RR42_RS23410 0.50 +0.1
580,338 + RR42_RS23410 0.65 +0.8
580,338 + RR42_RS23410 0.65 -0.8
580,486 + RR42_RS23410 0.82 +0.9
580,697 - +1.5
580,727 + -0.5
580,728 - -0.1
580,728 - -0.1
580,762 + +0.1
580,965 + RR42_RS23415 0.16 -0.0
580,965 + RR42_RS23415 0.16 -0.6
580,965 + RR42_RS23415 0.16 +0.6
581,033 + RR42_RS23415 0.29 -2.1
581,034 - RR42_RS23415 0.29 +0.5
581,034 - RR42_RS23415 0.29 +1.4
581,243 - RR42_RS23415 0.66 -0.3
581,282 + RR42_RS23415 0.74 +0.9
581,282 + RR42_RS23415 0.74 -0.9
581,283 - RR42_RS23415 0.74 -0.8
581,322 + RR42_RS23415 0.81 +1.4
581,348 + RR42_RS23415 0.85 -1.0
581,476 - -0.2
581,476 - -1.5

Or see this region's nucleotide sequence