Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23165

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23160 and RR42_RS23165 are separated by 100 nucleotidesRR42_RS23165 and RR42_RS23170 are separated by 9 nucleotides RR42_RS23160: RR42_RS23160 - AMP-dependent synthetase, at 528,096 to 529,649 _RS23160 RR42_RS23165: RR42_RS23165 - LysR family transcriptional regulator, at 529,750 to 530,640 _RS23165 RR42_RS23170: RR42_RS23170 - LysR family transcriptional regulator, at 530,650 to 531,585 _RS23170 Position (kb) 529 530 531Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 528.818 kb on - strand, within RR42_RS23160at 528.878 kb on + strand, within RR42_RS23160at 528.878 kb on + strand, within RR42_RS23160at 528.878 kb on + strand, within RR42_RS23160at 528.878 kb on + strand, within RR42_RS23160at 528.989 kb on - strand, within RR42_RS23160at 528.989 kb on - strand, within RR42_RS23160at 528.994 kb on + strand, within RR42_RS23160at 528.995 kb on - strand, within RR42_RS23160at 528.995 kb on - strand, within RR42_RS23160at 529.117 kb on + strand, within RR42_RS23160at 529.240 kb on + strand, within RR42_RS23160at 529.319 kb on - strand, within RR42_RS23160at 529.327 kb on + strand, within RR42_RS23160at 529.328 kb on - strand, within RR42_RS23160at 529.435 kb on + strand, within RR42_RS23160at 529.436 kb on - strand, within RR42_RS23160at 529.436 kb on - strand, within RR42_RS23160at 529.564 kb on + strandat 529.564 kb on + strandat 529.565 kb on - strandat 529.585 kb on + strandat 529.586 kb on - strandat 529.586 kb on - strandat 529.613 kb on - strandat 529.685 kb on + strandat 529.686 kb on - strandat 529.704 kb on - strandat 529.772 kb on - strandat 529.772 kb on - strandat 530.038 kb on + strand, within RR42_RS23165at 530.343 kb on + strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.344 kb on - strand, within RR42_RS23165at 530.468 kb on + strand, within RR42_RS23165at 530.468 kb on + strand, within RR42_RS23165at 530.468 kb on + strand, within RR42_RS23165at 530.469 kb on - strand, within RR42_RS23165at 530.475 kb on - strand, within RR42_RS23165at 530.584 kb on + strandat 530.584 kb on + strandat 530.584 kb on + strandat 530.651 kb on + strandat 530.769 kb on - strand, within RR42_RS23170at 530.837 kb on + strand, within RR42_RS23170at 530.837 kb on + strand, within RR42_RS23170at 530.837 kb on + strand, within RR42_RS23170at 530.935 kb on + strand, within RR42_RS23170at 530.935 kb on + strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.936 kb on - strand, within RR42_RS23170at 530.977 kb on + strand, within RR42_RS23170at 530.977 kb on + strand, within RR42_RS23170at 530.978 kb on - strand, within RR42_RS23170at 530.978 kb on - strand, within RR42_RS23170at 530.978 kb on - strand, within RR42_RS23170at 531.068 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.386 kb on + strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.387 kb on - strand, within RR42_RS23170at 531.533 kb on + strandat 531.621 kb on + strandat 531.622 kb on - strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.630 kb on + strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strandat 531.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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528,818 - RR42_RS23160 0.46 -0.4
528,878 + RR42_RS23160 0.50 +0.8
528,878 + RR42_RS23160 0.50 -0.0
528,878 + RR42_RS23160 0.50 +2.5
528,878 + RR42_RS23160 0.50 +0.1
528,989 - RR42_RS23160 0.57 -0.3
528,989 - RR42_RS23160 0.57 -1.7
528,994 + RR42_RS23160 0.58 +0.3
528,995 - RR42_RS23160 0.58 -0.7
528,995 - RR42_RS23160 0.58 +0.3
529,117 + RR42_RS23160 0.66 +1.2
529,240 + RR42_RS23160 0.74 -0.2
529,319 - RR42_RS23160 0.79 -0.5
529,327 + RR42_RS23160 0.79 -0.5
529,328 - RR42_RS23160 0.79 +1.6
529,435 + RR42_RS23160 0.86 -1.1
529,436 - RR42_RS23160 0.86 +0.5
529,436 - RR42_RS23160 0.86 -1.3
529,564 + +0.3
529,564 + +0.8
529,565 - +0.5
529,585 + +0.3
529,586 - -1.2
529,586 - -1.6
529,613 - +0.2
529,685 + -0.3
529,686 - +0.9
529,704 - -1.0
529,772 - +1.5
529,772 - -3.1
530,038 + RR42_RS23165 0.32 -0.4
530,343 + RR42_RS23165 0.67 +0.8
530,344 - RR42_RS23165 0.67 +0.1
530,344 - RR42_RS23165 0.67 -0.5
530,344 - RR42_RS23165 0.67 -1.3
530,344 - RR42_RS23165 0.67 +0.9
530,344 - RR42_RS23165 0.67 -0.1
530,468 + RR42_RS23165 0.81 +0.6
530,468 + RR42_RS23165 0.81 +0.8
530,468 + RR42_RS23165 0.81 -0.6
530,469 - RR42_RS23165 0.81 -1.4
530,475 - RR42_RS23165 0.81 -1.1
530,584 + -1.9
530,584 + +0.3
530,584 + -1.1
530,651 + -2.1
530,769 - RR42_RS23170 0.13 -0.9
530,837 + RR42_RS23170 0.20 -1.6
530,837 + RR42_RS23170 0.20 +0.3
530,837 + RR42_RS23170 0.20 -0.3
530,935 + RR42_RS23170 0.30 -2.4
530,935 + RR42_RS23170 0.30 -0.5
530,936 - RR42_RS23170 0.31 +0.6
530,936 - RR42_RS23170 0.31 +1.4
530,936 - RR42_RS23170 0.31 +0.2
530,936 - RR42_RS23170 0.31 +1.1
530,977 + RR42_RS23170 0.35 -1.6
530,977 + RR42_RS23170 0.35 +1.7
530,978 - RR42_RS23170 0.35 -0.2
530,978 - RR42_RS23170 0.35 +0.4
530,978 - RR42_RS23170 0.35 +0.2
531,068 + RR42_RS23170 0.45 +0.2
531,386 + RR42_RS23170 0.79 -0.9
531,386 + RR42_RS23170 0.79 -0.3
531,386 + RR42_RS23170 0.79 +0.4
531,386 + RR42_RS23170 0.79 -0.0
531,386 + RR42_RS23170 0.79 -1.0
531,386 + RR42_RS23170 0.79 -0.6
531,387 - RR42_RS23170 0.79 -0.2
531,387 - RR42_RS23170 0.79 -3.1
531,387 - RR42_RS23170 0.79 +0.6
531,387 - RR42_RS23170 0.79 +0.5
531,533 + -0.0
531,621 + -0.3
531,622 - -0.7
531,630 + -0.0
531,630 + -0.0
531,630 + -0.3
531,630 + +2.5
531,630 + +0.7
531,630 + -1.7
531,630 + -0.5
531,630 + -1.3
531,630 + -1.1
531,630 + -0.1
531,630 + +2.8
531,630 + -0.4
531,630 + -0.8
531,631 - -0.4
531,631 - -2.2
531,631 - +0.8
531,631 - -1.1
531,631 - +0.1
531,631 - -0.2
531,631 - -3.3
531,631 - +0.0
531,631 - +0.3
531,631 - +0.4
531,631 - +1.0
531,631 - -3.3
531,631 - +0.3

Or see this region's nucleotide sequence