Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22890

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS22880 and RR42_RS22885 are separated by 1 nucleotidesRR42_RS22885 and RR42_RS22890 are separated by 129 nucleotidesRR42_RS22890 and RR42_RS22895 are separated by 287 nucleotides RR42_RS22880: RR42_RS22880 - ABC transporter permease, at 465,033 to 465,938 _RS22880 RR42_RS22885: RR42_RS22885 - sugar ABC transporter permease, at 465,940 to 466,806 _RS22885 RR42_RS22890: RR42_RS22890 - TetR family transcriptional regulator, at 466,936 to 467,667 _RS22890 RR42_RS22895: RR42_RS22895 - 5-oxoprolinase, at 467,955 to 470,084 _RS22895 Position (kb) 466 467 468Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 466.048 kb on + strand, within RR42_RS22885at 466.049 kb on - strand, within RR42_RS22885at 466.049 kb on - strand, within RR42_RS22885at 466.049 kb on - strand, within RR42_RS22885at 466.049 kb on - strand, within RR42_RS22885at 466.171 kb on + strand, within RR42_RS22885at 466.171 kb on + strand, within RR42_RS22885at 466.171 kb on + strand, within RR42_RS22885at 466.316 kb on - strand, within RR42_RS22885at 466.408 kb on + strand, within RR42_RS22885at 466.569 kb on - strand, within RR42_RS22885at 466.574 kb on + strand, within RR42_RS22885at 466.627 kb on - strand, within RR42_RS22885at 466.627 kb on - strand, within RR42_RS22885at 466.627 kb on - strand, within RR42_RS22885at 466.690 kb on + strand, within RR42_RS22885at 466.691 kb on - strand, within RR42_RS22885at 466.751 kb on - strandat 466.786 kb on - strandat 467.033 kb on + strand, within RR42_RS22890at 467.033 kb on + strand, within RR42_RS22890at 467.034 kb on - strand, within RR42_RS22890at 467.124 kb on - strand, within RR42_RS22890at 467.141 kb on + strand, within RR42_RS22890at 467.142 kb on - strand, within RR42_RS22890at 467.166 kb on + strand, within RR42_RS22890at 467.166 kb on + strand, within RR42_RS22890at 467.166 kb on + strand, within RR42_RS22890at 467.166 kb on + strand, within RR42_RS22890at 467.170 kb on + strand, within RR42_RS22890at 467.171 kb on - strand, within RR42_RS22890at 467.171 kb on - strand, within RR42_RS22890at 467.495 kb on + strand, within RR42_RS22890at 467.495 kb on + strand, within RR42_RS22890at 467.502 kb on - strand, within RR42_RS22890at 467.752 kb on + strandat 468.372 kb on - strand, within RR42_RS22895at 468.400 kb on + strand, within RR42_RS22895at 468.468 kb on + strand, within RR42_RS22895at 468.468 kb on + strand, within RR42_RS22895at 468.468 kb on + strand, within RR42_RS22895at 468.468 kb on + strand, within RR42_RS22895at 468.468 kb on + strand, within RR42_RS22895at 468.470 kb on + strand, within RR42_RS22895at 468.470 kb on + strand, within RR42_RS22895at 468.471 kb on - strand, within RR42_RS22895at 468.471 kb on - strand, within RR42_RS22895at 468.471 kb on - strand, within RR42_RS22895at 468.574 kb on - strand, within RR42_RS22895at 468.606 kb on + strand, within RR42_RS22895at 468.606 kb on + strand, within RR42_RS22895at 468.607 kb on - strand, within RR42_RS22895at 468.630 kb on + strand, within RR42_RS22895

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
remove
466,048 + RR42_RS22885 0.12 -0.1
466,049 - RR42_RS22885 0.13 -0.1
466,049 - RR42_RS22885 0.13 +0.2
466,049 - RR42_RS22885 0.13 +0.0
466,049 - RR42_RS22885 0.13 -0.8
466,171 + RR42_RS22885 0.27 +0.4
466,171 + RR42_RS22885 0.27 +1.1
466,171 + RR42_RS22885 0.27 +0.7
466,316 - RR42_RS22885 0.43 -1.6
466,408 + RR42_RS22885 0.54 +0.3
466,569 - RR42_RS22885 0.73 +0.4
466,574 + RR42_RS22885 0.73 -0.2
466,627 - RR42_RS22885 0.79 -0.4
466,627 - RR42_RS22885 0.79 -1.4
466,627 - RR42_RS22885 0.79 +1.7
466,690 + RR42_RS22885 0.87 +0.7
466,691 - RR42_RS22885 0.87 -1.0
466,751 - +1.7
466,786 - -0.7
467,033 + RR42_RS22890 0.13 -1.2
467,033 + RR42_RS22890 0.13 -2.2
467,034 - RR42_RS22890 0.13 -0.4
467,124 - RR42_RS22890 0.26 +1.2
467,141 + RR42_RS22890 0.28 -0.4
467,142 - RR42_RS22890 0.28 -3.2
467,166 + RR42_RS22890 0.31 -0.7
467,166 + RR42_RS22890 0.31 -1.1
467,166 + RR42_RS22890 0.31 -2.7
467,166 + RR42_RS22890 0.31 -0.8
467,170 + RR42_RS22890 0.32 -1.0
467,171 - RR42_RS22890 0.32 -4.1
467,171 - RR42_RS22890 0.32 -0.8
467,495 + RR42_RS22890 0.76 -0.7
467,495 + RR42_RS22890 0.76 -3.3
467,502 - RR42_RS22890 0.77 -2.4
467,752 + -0.7
468,372 - RR42_RS22895 0.20 -0.7
468,400 + RR42_RS22895 0.21 -1.1
468,468 + RR42_RS22895 0.24 -0.4
468,468 + RR42_RS22895 0.24 +0.2
468,468 + RR42_RS22895 0.24 +0.3
468,468 + RR42_RS22895 0.24 -0.2
468,468 + RR42_RS22895 0.24 -1.8
468,470 + RR42_RS22895 0.24 -0.7
468,470 + RR42_RS22895 0.24 -1.2
468,471 - RR42_RS22895 0.24 -0.8
468,471 - RR42_RS22895 0.24 +0.9
468,471 - RR42_RS22895 0.24 -0.6
468,574 - RR42_RS22895 0.29 -0.4
468,606 + RR42_RS22895 0.31 -2.0
468,606 + RR42_RS22895 0.31 -0.6
468,607 - RR42_RS22895 0.31 -1.1
468,630 + RR42_RS22895 0.32 +1.5

Or see this region's nucleotide sequence