Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22685 and RR42_RS22690 are separated by 44 nucleotides RR42_RS22690 and RR42_RS22695 are separated by 316 nucleotides RR42_RS22695 and RR42_RS22700 are separated by 193 nucleotides
RR42_RS22685: RR42_RS22685 - ABC transporter substrate-binding protein, at 424,385 to 425,356
_RS22685
RR42_RS22690: RR42_RS22690 - CoA-transferase, at 425,401 to 426,582
_RS22690
RR42_RS22695: RR42_RS22695 - chemotaxis protein, at 426,899 to 427,324
_RS22695
RR42_RS22700: RR42_RS22700 - phasin, at 427,518 to 428,075
_RS22700
Position (kb) 425
426
427 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 424.408 kb on + strand at 424.648 kb on - strand, within RR42_RS22685 at 424.648 kb on - strand, within RR42_RS22685 at 424.667 kb on + strand, within RR42_RS22685 at 424.667 kb on + strand, within RR42_RS22685 at 424.809 kb on + strand, within RR42_RS22685 at 424.809 kb on + strand, within RR42_RS22685 at 424.810 kb on - strand, within RR42_RS22685 at 424.810 kb on - strand, within RR42_RS22685 at 424.902 kb on + strand, within RR42_RS22685 at 424.903 kb on - strand, within RR42_RS22685 at 424.903 kb on - strand, within RR42_RS22685 at 424.903 kb on - strand, within RR42_RS22685 at 425.034 kb on + strand, within RR42_RS22685 at 425.034 kb on + strand, within RR42_RS22685 at 425.034 kb on + strand, within RR42_RS22685 at 425.128 kb on - strand, within RR42_RS22685 at 425.250 kb on + strand, within RR42_RS22685 at 425.283 kb on + strand at 425.382 kb on - strand at 425.400 kb on - strand at 425.402 kb on + strand at 425.403 kb on - strand at 425.403 kb on - strand at 425.412 kb on + strand at 425.714 kb on + strand, within RR42_RS22690 at 425.714 kb on + strand, within RR42_RS22690 at 425.888 kb on + strand, within RR42_RS22690 at 425.889 kb on - strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.008 kb on + strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.009 kb on - strand, within RR42_RS22690 at 426.089 kb on + strand, within RR42_RS22690 at 426.090 kb on - strand, within RR42_RS22690 at 426.122 kb on + strand, within RR42_RS22690 at 426.122 kb on + strand, within RR42_RS22690 at 426.123 kb on - strand, within RR42_RS22690 at 426.123 kb on - strand, within RR42_RS22690 at 426.123 kb on - strand, within RR42_RS22690 at 426.123 kb on - strand, within RR42_RS22690 at 426.182 kb on + strand, within RR42_RS22690 at 426.218 kb on + strand, within RR42_RS22690 at 426.254 kb on + strand, within RR42_RS22690 at 426.255 kb on - strand, within RR42_RS22690 at 426.255 kb on - strand, within RR42_RS22690 at 426.324 kb on - strand, within RR42_RS22690 at 426.368 kb on + strand, within RR42_RS22690 at 426.425 kb on + strand, within RR42_RS22690 at 426.425 kb on + strand, within RR42_RS22690 at 426.426 kb on - strand, within RR42_RS22690 at 426.472 kb on + strand at 426.472 kb on + strand at 426.472 kb on + strand at 426.472 kb on + strand at 426.473 kb on - strand at 426.532 kb on + strand at 426.533 kb on - strand at 426.653 kb on + strand at 426.653 kb on + strand at 426.654 kb on - strand at 426.654 kb on - strand at 426.792 kb on - strand at 426.950 kb on + strand, within RR42_RS22695 at 426.951 kb on - strand, within RR42_RS22695 at 426.970 kb on + strand, within RR42_RS22695 at 426.971 kb on - strand, within RR42_RS22695 at 427.204 kb on + strand, within RR42_RS22695 at 427.204 kb on + strand, within RR42_RS22695 at 427.322 kb on + strand at 427.383 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 424,408 + -1.7 424,648 - RR42_RS22685 0.27 +1.4 424,648 - RR42_RS22685 0.27 +1.9 424,667 + RR42_RS22685 0.29 -1.6 424,667 + RR42_RS22685 0.29 -0.8 424,809 + RR42_RS22685 0.44 -0.5 424,809 + RR42_RS22685 0.44 -0.4 424,810 - RR42_RS22685 0.44 -1.8 424,810 - RR42_RS22685 0.44 +2.2 424,902 + RR42_RS22685 0.53 -2.6 424,903 - RR42_RS22685 0.53 -0.8 424,903 - RR42_RS22685 0.53 +1.5 424,903 - RR42_RS22685 0.53 -1.1 425,034 + RR42_RS22685 0.67 -0.7 425,034 + RR42_RS22685 0.67 -0.8 425,034 + RR42_RS22685 0.67 -1.5 425,128 - RR42_RS22685 0.76 -1.8 425,250 + RR42_RS22685 0.89 +1.2 425,283 + +1.3 425,382 - +0.5 425,400 - +0.4 425,402 + +1.2 425,403 - -1.4 425,403 - +0.1 425,412 + -1.6 425,714 + RR42_RS22690 0.26 +0.4 425,714 + RR42_RS22690 0.26 +0.1 425,888 + RR42_RS22690 0.41 -0.4 425,889 - RR42_RS22690 0.41 +0.4 426,008 + RR42_RS22690 0.51 +0.2 426,008 + RR42_RS22690 0.51 -0.9 426,008 + RR42_RS22690 0.51 -1.5 426,008 + RR42_RS22690 0.51 +1.0 426,008 + RR42_RS22690 0.51 -1.3 426,008 + RR42_RS22690 0.51 -1.3 426,008 + RR42_RS22690 0.51 +0.2 426,009 - RR42_RS22690 0.51 -0.1 426,009 - RR42_RS22690 0.51 -2.1 426,009 - RR42_RS22690 0.51 -0.1 426,009 - RR42_RS22690 0.51 -4.0 426,009 - RR42_RS22690 0.51 +0.7 426,009 - RR42_RS22690 0.51 +0.4 426,009 - RR42_RS22690 0.51 -1.1 426,009 - RR42_RS22690 0.51 +1.1 426,089 + RR42_RS22690 0.58 +0.7 426,090 - RR42_RS22690 0.58 -2.1 426,122 + RR42_RS22690 0.61 +0.0 426,122 + RR42_RS22690 0.61 -1.7 426,123 - RR42_RS22690 0.61 +0.5 426,123 - RR42_RS22690 0.61 +0.7 426,123 - RR42_RS22690 0.61 +1.0 426,123 - RR42_RS22690 0.61 -0.1 426,182 + RR42_RS22690 0.66 -0.2 426,218 + RR42_RS22690 0.69 -0.3 426,254 + RR42_RS22690 0.72 -0.8 426,255 - RR42_RS22690 0.72 +1.2 426,255 - RR42_RS22690 0.72 -0.3 426,324 - RR42_RS22690 0.78 -0.8 426,368 + RR42_RS22690 0.82 +0.7 426,425 + RR42_RS22690 0.87 +0.5 426,425 + RR42_RS22690 0.87 -1.3 426,426 - RR42_RS22690 0.87 -1.7 426,472 + +1.6 426,472 + +1.5 426,472 + -1.2 426,472 + -0.5 426,473 - -0.3 426,532 + -1.3 426,533 - +1.0 426,653 + +0.9 426,653 + +0.2 426,654 - +0.4 426,654 - +0.0 426,792 - -0.5 426,950 + RR42_RS22695 0.12 +0.7 426,951 - RR42_RS22695 0.12 -1.1 426,970 + RR42_RS22695 0.17 +0.5 426,971 - RR42_RS22695 0.17 +0.1 427,204 + RR42_RS22695 0.72 -1.2 427,204 + RR42_RS22695 0.72 -0.6 427,322 + -0.4 427,383 + +0.4
Or see this region's nucleotide sequence