Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22240 and RR42_RS22245 are separated by 364 nucleotides RR42_RS22245 and RR42_RS22250 are separated by 25 nucleotides RR42_RS22250 and RR42_RS22255 are separated by 23 nucleotides
RR42_RS22240: RR42_RS22240 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 327,707 to 329,008
_RS22240
RR42_RS22245: RR42_RS22245 - cytochrome C biogenesis protein, at 329,373 to 330,320
_RS22245
RR42_RS22250: RR42_RS22250 - hypothetical protein, at 330,346 to 330,642
_RS22250
RR42_RS22255: RR42_RS22255 - hypothetical protein, at 330,666 to 332,096
_RS22255
Position (kb) 329
330
331 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 328.724 kb on + strand, within RR42_RS22240 at 328.850 kb on + strand, within RR42_RS22240 at 329.007 kb on - strand at 329.024 kb on + strand at 329.176 kb on + strand at 329.177 kb on - strand at 329.177 kb on - strand at 329.177 kb on - strand at 329.177 kb on - strand at 329.197 kb on - strand at 329.228 kb on + strand at 329.228 kb on + strand at 329.295 kb on + strand at 329.295 kb on + strand at 329.296 kb on - strand at 329.297 kb on + strand at 329.297 kb on + strand at 329.297 kb on + strand at 329.297 kb on + strand at 329.298 kb on - strand at 329.298 kb on - strand at 329.301 kb on + strand at 329.302 kb on - strand at 329.302 kb on - strand at 329.302 kb on - strand at 329.379 kb on + strand at 329.380 kb on - strand at 329.391 kb on + strand at 329.392 kb on - strand at 329.466 kb on + strand at 329.467 kb on - strand at 329.467 kb on - strand at 329.529 kb on + strand, within RR42_RS22245 at 329.530 kb on - strand, within RR42_RS22245 at 329.587 kb on - strand, within RR42_RS22245 at 329.640 kb on + strand, within RR42_RS22245 at 329.640 kb on + strand, within RR42_RS22245 at 329.834 kb on + strand, within RR42_RS22245 at 329.834 kb on + strand, within RR42_RS22245 at 329.983 kb on - strand, within RR42_RS22245 at 330.284 kb on + strand at 330.284 kb on + strand at 330.341 kb on + strand at 330.342 kb on - strand at 330.609 kb on - strand, within RR42_RS22250 at 330.718 kb on + strand at 330.718 kb on + strand at 330.718 kb on + strand at 330.718 kb on + strand at 330.719 kb on - strand at 330.719 kb on - strand at 330.719 kb on - strand at 330.947 kb on - strand, within RR42_RS22255
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 328,724 + RR42_RS22240 0.78 -2.7 328,850 + RR42_RS22240 0.88 +1.2 329,007 - -0.8 329,024 + +0.9 329,176 + +1.7 329,177 - +0.1 329,177 - +0.5 329,177 - -0.1 329,177 - +0.8 329,197 - -0.3 329,228 + -0.1 329,228 + -0.0 329,295 + +0.2 329,295 + -1.0 329,296 - -1.4 329,297 + +0.7 329,297 + +0.7 329,297 + -3.3 329,297 + +0.8 329,298 - -1.0 329,298 - -0.9 329,301 + +1.8 329,302 - +0.7 329,302 - -0.4 329,302 - -1.9 329,379 + +0.2 329,380 - -0.7 329,391 + -3.3 329,392 - +1.3 329,466 + +0.5 329,467 - +0.2 329,467 - +0.7 329,529 + RR42_RS22245 0.16 +1.6 329,530 - RR42_RS22245 0.17 -0.4 329,587 - RR42_RS22245 0.23 +2.8 329,640 + RR42_RS22245 0.28 -0.3 329,640 + RR42_RS22245 0.28 +0.3 329,834 + RR42_RS22245 0.49 -0.0 329,834 + RR42_RS22245 0.49 +0.2 329,983 - RR42_RS22245 0.64 +0.7 330,284 + +1.1 330,284 + -2.1 330,341 + -2.9 330,342 - -0.9 330,609 - RR42_RS22250 0.89 +0.2 330,718 + +0.2 330,718 + -0.3 330,718 + +0.5 330,718 + -0.3 330,719 - +0.1 330,719 - +0.5 330,719 - +0.8 330,947 - RR42_RS22255 0.20 -1.5
Or see this region's nucleotide sequence