Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22210 and RR42_RS22215 are separated by 79 nucleotides RR42_RS22215 and RR42_RS22220 overlap by 8 nucleotides RR42_RS22220 and RR42_RS22225 overlap by 4 nucleotides
RR42_RS22210: RR42_RS22210 - cytochrome O ubiquinol oxidase, at 321,194 to 322,252
_RS22210
RR42_RS22215: RR42_RS22215 - cytochrome o ubiquinol oxidase subunit I, at 322,332 to 324,335
_RS22215
RR42_RS22220: RR42_RS22220 - cytochrome o ubiquinol oxidase subunit III, at 324,328 to 324,984
_RS22220
RR42_RS22225: RR42_RS22225 - cytochrome C oxidase subunit III, at 324,981 to 325,388
_RS22225
Position (kb) 322
323
324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 321.373 kb on - strand, within RR42_RS22210 at 321.736 kb on + strand, within RR42_RS22210 at 321.761 kb on + strand, within RR42_RS22210 at 321.762 kb on - strand, within RR42_RS22210 at 321.818 kb on + strand, within RR42_RS22210 at 321.956 kb on + strand, within RR42_RS22210 at 321.956 kb on + strand, within RR42_RS22210 at 321.984 kb on + strand, within RR42_RS22210 at 322.001 kb on + strand, within RR42_RS22210 at 322.025 kb on + strand, within RR42_RS22210 at 322.026 kb on - strand, within RR42_RS22210 at 322.489 kb on - strand at 322.543 kb on - strand, within RR42_RS22215 at 322.543 kb on - strand, within RR42_RS22215 at 322.543 kb on - strand, within RR42_RS22215 at 322.543 kb on - strand, within RR42_RS22215 at 322.543 kb on - strand, within RR42_RS22215 at 322.543 kb on - strand, within RR42_RS22215 at 322.879 kb on - strand, within RR42_RS22215 at 322.927 kb on - strand, within RR42_RS22215 at 322.929 kb on + strand, within RR42_RS22215 at 322.929 kb on + strand, within RR42_RS22215 at 322.929 kb on + strand, within RR42_RS22215 at 322.929 kb on + strand, within RR42_RS22215 at 322.930 kb on - strand, within RR42_RS22215 at 322.930 kb on - strand, within RR42_RS22215 at 322.980 kb on - strand, within RR42_RS22215 at 323.184 kb on + strand, within RR42_RS22215 at 323.185 kb on - strand, within RR42_RS22215 at 323.185 kb on - strand, within RR42_RS22215 at 323.185 kb on - strand, within RR42_RS22215 at 323.185 kb on - strand, within RR42_RS22215 at 323.185 kb on - strand, within RR42_RS22215 at 323.185 kb on - strand, within RR42_RS22215 at 323.223 kb on + strand, within RR42_RS22215 at 323.223 kb on + strand, within RR42_RS22215 at 323.223 kb on + strand, within RR42_RS22215 at 323.223 kb on + strand, within RR42_RS22215 at 323.298 kb on + strand, within RR42_RS22215 at 323.314 kb on - strand, within RR42_RS22215 at 323.343 kb on + strand, within RR42_RS22215 at 323.472 kb on + strand, within RR42_RS22215 at 323.472 kb on + strand, within RR42_RS22215 at 323.473 kb on - strand, within RR42_RS22215 at 323.594 kb on + strand, within RR42_RS22215 at 323.594 kb on + strand, within RR42_RS22215 at 323.673 kb on + strand, within RR42_RS22215 at 323.775 kb on + strand, within RR42_RS22215 at 323.776 kb on - strand, within RR42_RS22215 at 323.776 kb on - strand, within RR42_RS22215 at 323.872 kb on - strand, within RR42_RS22215 at 323.881 kb on + strand, within RR42_RS22215 at 324.098 kb on + strand, within RR42_RS22215 at 324.265 kb on - strand at 324.265 kb on - strand at 324.267 kb on + strand at 324.268 kb on - strand at 324.268 kb on - strand at 324.268 kb on - strand at 324.398 kb on + strand, within RR42_RS22220 at 324.398 kb on + strand, within RR42_RS22220 at 324.399 kb on - strand, within RR42_RS22220 at 324.399 kb on - strand, within RR42_RS22220 at 324.406 kb on + strand, within RR42_RS22220 at 324.460 kb on + strand, within RR42_RS22220 at 324.461 kb on - strand, within RR42_RS22220 at 324.461 kb on - strand, within RR42_RS22220 at 324.505 kb on + strand, within RR42_RS22220 at 324.506 kb on - strand, within RR42_RS22220 at 324.506 kb on - strand, within RR42_RS22220 at 324.614 kb on - strand, within RR42_RS22220 at 324.614 kb on - strand, within RR42_RS22220 at 324.718 kb on + strand, within RR42_RS22220 at 324.718 kb on + strand, within RR42_RS22220 at 324.719 kb on - strand, within RR42_RS22220 at 324.719 kb on - strand, within RR42_RS22220 at 324.962 kb on - strand at 325.071 kb on - strand, within RR42_RS22225 at 325.087 kb on - strand, within RR42_RS22225 at 325.087 kb on - strand, within RR42_RS22225 at 325.225 kb on + strand, within RR42_RS22225 at 325.225 kb on + strand, within RR42_RS22225 at 325.225 kb on + strand, within RR42_RS22225 at 325.226 kb on - strand, within RR42_RS22225 at 325.228 kb on - strand, within RR42_RS22225 at 325.228 kb on - strand, within RR42_RS22225 at 325.228 kb on - strand, within RR42_RS22225 at 325.239 kb on - strand, within RR42_RS22225
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 321,373 - RR42_RS22210 0.17 +0.2 321,736 + RR42_RS22210 0.51 -1.4 321,761 + RR42_RS22210 0.54 -1.4 321,762 - RR42_RS22210 0.54 -0.7 321,818 + RR42_RS22210 0.59 -1.2 321,956 + RR42_RS22210 0.72 -0.4 321,956 + RR42_RS22210 0.72 -0.2 321,984 + RR42_RS22210 0.75 -0.8 322,001 + RR42_RS22210 0.76 -1.7 322,025 + RR42_RS22210 0.78 -0.2 322,026 - RR42_RS22210 0.79 +0.3 322,489 - -1.3 322,543 - RR42_RS22215 0.11 +0.1 322,543 - RR42_RS22215 0.11 -1.5 322,543 - RR42_RS22215 0.11 -1.8 322,543 - RR42_RS22215 0.11 +1.4 322,543 - RR42_RS22215 0.11 +1.2 322,543 - RR42_RS22215 0.11 -0.7 322,879 - RR42_RS22215 0.27 +1.2 322,927 - RR42_RS22215 0.30 -0.3 322,929 + RR42_RS22215 0.30 -0.9 322,929 + RR42_RS22215 0.30 -0.9 322,929 + RR42_RS22215 0.30 -0.1 322,929 + RR42_RS22215 0.30 -0.1 322,930 - RR42_RS22215 0.30 -1.2 322,930 - RR42_RS22215 0.30 -0.4 322,980 - RR42_RS22215 0.32 -0.3 323,184 + RR42_RS22215 0.43 -3.2 323,185 - RR42_RS22215 0.43 +1.1 323,185 - RR42_RS22215 0.43 +0.1 323,185 - RR42_RS22215 0.43 -1.5 323,185 - RR42_RS22215 0.43 -1.9 323,185 - RR42_RS22215 0.43 +0.3 323,185 - RR42_RS22215 0.43 +0.1 323,223 + RR42_RS22215 0.44 -0.1 323,223 + RR42_RS22215 0.44 +0.3 323,223 + RR42_RS22215 0.44 -0.1 323,223 + RR42_RS22215 0.44 -0.8 323,298 + RR42_RS22215 0.48 +0.4 323,314 - RR42_RS22215 0.49 +0.1 323,343 + RR42_RS22215 0.50 +2.2 323,472 + RR42_RS22215 0.57 -0.9 323,472 + RR42_RS22215 0.57 -0.2 323,473 - RR42_RS22215 0.57 -1.0 323,594 + RR42_RS22215 0.63 +0.5 323,594 + RR42_RS22215 0.63 +1.9 323,673 + RR42_RS22215 0.67 -3.4 323,775 + RR42_RS22215 0.72 -1.4 323,776 - RR42_RS22215 0.72 -1.0 323,776 - RR42_RS22215 0.72 +1.4 323,872 - RR42_RS22215 0.77 -0.1 323,881 + RR42_RS22215 0.77 +0.0 324,098 + RR42_RS22215 0.88 -1.1 324,265 - +0.1 324,265 - -3.6 324,267 + +0.2 324,268 - -2.2 324,268 - -0.2 324,268 - -1.6 324,398 + RR42_RS22220 0.11 -0.7 324,398 + RR42_RS22220 0.11 -0.2 324,399 - RR42_RS22220 0.11 -3.2 324,399 - RR42_RS22220 0.11 +0.1 324,406 + RR42_RS22220 0.12 -0.6 324,460 + RR42_RS22220 0.20 +1.2 324,461 - RR42_RS22220 0.20 +0.7 324,461 - RR42_RS22220 0.20 -0.0 324,505 + RR42_RS22220 0.27 +0.0 324,506 - RR42_RS22220 0.27 -2.2 324,506 - RR42_RS22220 0.27 +0.2 324,614 - RR42_RS22220 0.44 -0.2 324,614 - RR42_RS22220 0.44 -1.1 324,718 + RR42_RS22220 0.59 -1.6 324,718 + RR42_RS22220 0.59 -0.3 324,719 - RR42_RS22220 0.60 -2.5 324,719 - RR42_RS22220 0.60 +0.0 324,962 - +1.0 325,071 - RR42_RS22225 0.22 +0.3 325,087 - RR42_RS22225 0.26 +0.0 325,087 - RR42_RS22225 0.26 -0.4 325,225 + RR42_RS22225 0.60 +0.5 325,225 + RR42_RS22225 0.60 +0.5 325,225 + RR42_RS22225 0.60 -0.5 325,226 - RR42_RS22225 0.60 -2.6 325,228 - RR42_RS22225 0.61 +1.9 325,228 - RR42_RS22225 0.61 -1.3 325,228 - RR42_RS22225 0.61 +0.4 325,239 - RR42_RS22225 0.63 +0.6
Or see this region's nucleotide sequence