Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22020

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22015 and RR42_RS22020 are separated by 15 nucleotidesRR42_RS22020 and RR42_RS22025 are separated by 256 nucleotides RR42_RS22015: RR42_RS22015 - histidine kinase, at 271,259 to 273,655 _RS22015 RR42_RS22020: RR42_RS22020 - hypothetical protein, at 273,671 to 273,856 _RS22020 RR42_RS22025: RR42_RS22025 - AraC family transcriptional regulator, at 274,113 to 275,090 _RS22025 Position (kb) 273 274Strain fitness (log2 ratio) -2 -1 0 1 2 3at 272.790 kb on - strand, within RR42_RS22015at 272.802 kb on + strand, within RR42_RS22015at 272.803 kb on - strand, within RR42_RS22015at 272.803 kb on - strand, within RR42_RS22015at 272.960 kb on - strand, within RR42_RS22015at 273.244 kb on - strand, within RR42_RS22015at 273.244 kb on - strand, within RR42_RS22015at 273.414 kb on - strand, within RR42_RS22015at 273.846 kb on + strandat 273.847 kb on - strandat 273.902 kb on + strandat 273.916 kb on - strandat 273.936 kb on - strandat 274.017 kb on + strandat 274.018 kb on - strandat 274.018 kb on - strandat 274.162 kb on + strandat 274.275 kb on - strand, within RR42_RS22025at 274.275 kb on - strand, within RR42_RS22025at 274.279 kb on - strand, within RR42_RS22025at 274.654 kb on + strand, within RR42_RS22025at 274.654 kb on + strand, within RR42_RS22025at 274.655 kb on - strand, within RR42_RS22025at 274.655 kb on - strand, within RR42_RS22025at 274.788 kb on + strand, within RR42_RS22025at 274.788 kb on + strand, within RR42_RS22025

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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272,790 - RR42_RS22015 0.64 -0.4
272,802 + RR42_RS22015 0.64 -1.7
272,803 - RR42_RS22015 0.64 +0.3
272,803 - RR42_RS22015 0.64 +0.2
272,960 - RR42_RS22015 0.71 +1.0
273,244 - RR42_RS22015 0.83 -0.9
273,244 - RR42_RS22015 0.83 -1.7
273,414 - RR42_RS22015 0.90 -1.1
273,846 + +0.7
273,847 - -0.3
273,902 + -1.3
273,916 - -1.4
273,936 - -0.7
274,017 + -1.4
274,018 - -2.2
274,018 - -1.0
274,162 + +0.1
274,275 - RR42_RS22025 0.17 +3.5
274,275 - RR42_RS22025 0.17 +0.3
274,279 - RR42_RS22025 0.17 -0.4
274,654 + RR42_RS22025 0.55 -2.6
274,654 + RR42_RS22025 0.55 +0.8
274,655 - RR42_RS22025 0.55 -0.4
274,655 - RR42_RS22025 0.55 +1.3
274,788 + RR42_RS22025 0.69 -0.4
274,788 + RR42_RS22025 0.69 +0.6

Or see this region's nucleotide sequence