Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21705

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21700 and RR42_RS21705 are separated by 284 nucleotidesRR42_RS21705 and RR42_RS21710 are separated by 81 nucleotides RR42_RS21700: RR42_RS21700 - membrane protein, at 195,564 to 197,135 _RS21700 RR42_RS21705: RR42_RS21705 - alcohol dehydrogenase, at 197,420 to 198,385 _RS21705 RR42_RS21710: RR42_RS21710 - haloacid dehalogenase, at 198,467 to 199,174 _RS21710 Position (kb) 197 198 199Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 196.631 kb on - strand, within RR42_RS21700at 196.631 kb on - strand, within RR42_RS21700at 196.631 kb on - strand, within RR42_RS21700at 196.639 kb on + strand, within RR42_RS21700at 196.639 kb on + strand, within RR42_RS21700at 196.639 kb on + strand, within RR42_RS21700at 196.639 kb on + strand, within RR42_RS21700at 196.639 kb on + strand, within RR42_RS21700at 196.639 kb on + strand, within RR42_RS21700at 196.640 kb on - strand, within RR42_RS21700at 196.640 kb on - strand, within RR42_RS21700at 196.640 kb on - strand, within RR42_RS21700at 196.640 kb on - strand, within RR42_RS21700at 196.760 kb on - strand, within RR42_RS21700at 196.867 kb on + strand, within RR42_RS21700at 196.868 kb on - strand, within RR42_RS21700at 196.868 kb on - strand, within RR42_RS21700at 196.963 kb on + strand, within RR42_RS21700at 196.963 kb on + strand, within RR42_RS21700at 196.964 kb on - strand, within RR42_RS21700at 197.300 kb on + strandat 197.301 kb on - strandat 197.301 kb on - strandat 197.311 kb on - strandat 197.356 kb on + strandat 197.356 kb on + strandat 197.356 kb on + strandat 197.357 kb on - strandat 197.589 kb on - strand, within RR42_RS21705at 197.738 kb on + strand, within RR42_RS21705at 197.738 kb on + strand, within RR42_RS21705at 197.739 kb on - strand, within RR42_RS21705at 197.741 kb on - strand, within RR42_RS21705at 197.787 kb on - strand, within RR42_RS21705at 197.798 kb on + strand, within RR42_RS21705at 197.799 kb on - strand, within RR42_RS21705at 197.907 kb on - strand, within RR42_RS21705at 197.987 kb on + strand, within RR42_RS21705at 197.987 kb on + strand, within RR42_RS21705at 197.988 kb on - strand, within RR42_RS21705at 197.996 kb on + strand, within RR42_RS21705at 197.996 kb on + strand, within RR42_RS21705at 197.996 kb on + strand, within RR42_RS21705at 197.997 kb on - strand, within RR42_RS21705at 198.065 kb on + strand, within RR42_RS21705at 198.065 kb on + strand, within RR42_RS21705at 198.065 kb on + strand, within RR42_RS21705at 198.066 kb on - strand, within RR42_RS21705at 198.066 kb on - strand, within RR42_RS21705at 198.066 kb on - strand, within RR42_RS21705at 198.066 kb on - strand, within RR42_RS21705at 198.069 kb on - strand, within RR42_RS21705at 198.101 kb on + strand, within RR42_RS21705at 198.101 kb on + strand, within RR42_RS21705at 198.237 kb on + strand, within RR42_RS21705at 198.237 kb on + strand, within RR42_RS21705at 198.407 kb on + strandat 198.407 kb on + strandat 198.523 kb on + strandat 198.523 kb on + strandat 198.879 kb on - strand, within RR42_RS21710at 198.879 kb on - strand, within RR42_RS21710at 198.950 kb on + strand, within RR42_RS21710at 198.950 kb on + strand, within RR42_RS21710at 198.950 kb on + strand, within RR42_RS21710at 198.951 kb on - strand, within RR42_RS21710at 199.058 kb on + strand, within RR42_RS21710at 199.058 kb on + strand, within RR42_RS21710at 199.059 kb on - strand, within RR42_RS21710at 199.059 kb on - strand, within RR42_RS21710at 199.139 kb on - strandat 199.139 kb on - strandat 199.223 kb on + strandat 199.329 kb on + strandat 199.334 kb on + strandat 199.335 kb on - strandat 199.335 kb on - strandat 199.335 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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196,631 - RR42_RS21700 0.68 -0.5
196,631 - RR42_RS21700 0.68 +0.2
196,631 - RR42_RS21700 0.68 +0.3
196,639 + RR42_RS21700 0.68 -0.6
196,639 + RR42_RS21700 0.68 -0.1
196,639 + RR42_RS21700 0.68 -0.5
196,639 + RR42_RS21700 0.68 -0.1
196,639 + RR42_RS21700 0.68 +0.0
196,639 + RR42_RS21700 0.68 +0.5
196,640 - RR42_RS21700 0.68 +0.2
196,640 - RR42_RS21700 0.68 -0.1
196,640 - RR42_RS21700 0.68 +1.0
196,640 - RR42_RS21700 0.68 -2.3
196,760 - RR42_RS21700 0.76 -1.1
196,867 + RR42_RS21700 0.83 +0.5
196,868 - RR42_RS21700 0.83 -0.4
196,868 - RR42_RS21700 0.83 -0.8
196,963 + RR42_RS21700 0.89 -1.4
196,963 + RR42_RS21700 0.89 -1.7
196,964 - RR42_RS21700 0.89 -2.1
197,300 + -3.3
197,301 - +0.5
197,301 - +1.1
197,311 - +1.7
197,356 + +0.2
197,356 + +0.2
197,356 + -0.6
197,357 - -1.9
197,589 - RR42_RS21705 0.17 -3.3
197,738 + RR42_RS21705 0.33 -1.8
197,738 + RR42_RS21705 0.33 -0.6
197,739 - RR42_RS21705 0.33 +0.2
197,741 - RR42_RS21705 0.33 -0.9
197,787 - RR42_RS21705 0.38 +0.3
197,798 + RR42_RS21705 0.39 -0.8
197,799 - RR42_RS21705 0.39 +0.5
197,907 - RR42_RS21705 0.50 -0.3
197,987 + RR42_RS21705 0.59 -0.9
197,987 + RR42_RS21705 0.59 +0.7
197,988 - RR42_RS21705 0.59 -1.3
197,996 + RR42_RS21705 0.60 -0.9
197,996 + RR42_RS21705 0.60 -1.1
197,996 + RR42_RS21705 0.60 -3.0
197,997 - RR42_RS21705 0.60 -1.2
198,065 + RR42_RS21705 0.67 -0.8
198,065 + RR42_RS21705 0.67 +1.2
198,065 + RR42_RS21705 0.67 -0.3
198,066 - RR42_RS21705 0.67 +1.5
198,066 - RR42_RS21705 0.67 -0.7
198,066 - RR42_RS21705 0.67 -2.1
198,066 - RR42_RS21705 0.67 -0.0
198,069 - RR42_RS21705 0.67 +0.7
198,101 + RR42_RS21705 0.70 +1.2
198,101 + RR42_RS21705 0.70 -0.2
198,237 + RR42_RS21705 0.85 -0.7
198,237 + RR42_RS21705 0.85 -0.2
198,407 + -1.9
198,407 + -0.0
198,523 + +0.2
198,523 + -0.3
198,879 - RR42_RS21710 0.58 +0.1
198,879 - RR42_RS21710 0.58 -0.2
198,950 + RR42_RS21710 0.68 +1.2
198,950 + RR42_RS21710 0.68 -2.1
198,950 + RR42_RS21710 0.68 +1.1
198,951 - RR42_RS21710 0.68 -0.7
199,058 + RR42_RS21710 0.83 -0.4
199,058 + RR42_RS21710 0.83 +0.0
199,059 - RR42_RS21710 0.84 -1.5
199,059 - RR42_RS21710 0.84 +0.4
199,139 - +2.5
199,139 - -0.7
199,223 + +0.3
199,329 + -0.1
199,334 + +0.7
199,335 - -0.6
199,335 - +0.4
199,335 - +0.7

Or see this region's nucleotide sequence