Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21260 and RR42_RS21265 are separated by 106 nucleotides RR42_RS21265 and RR42_RS21270 are separated by 180 nucleotides RR42_RS21270 and RR42_RS21275 are separated by 69 nucleotides
RR42_RS21260: RR42_RS21260 - isovaleryl-CoA dehydrogenase, at 95,066 to 96,862
_RS21260
RR42_RS21265: RR42_RS21265 - ABC transporter substrate-binding protein, at 96,969 to 97,949
_RS21265
RR42_RS21270: RR42_RS21270 - phenylacetic acid degradation-like protein, at 98,130 to 98,585
_RS21270
RR42_RS21275: RR42_RS21275 - carnitine dehydratase, at 98,655 to 99,806
_RS21275
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 95.969 kb on + strand, within RR42_RS21260 at 95.969 kb on + strand, within RR42_RS21260 at 96.251 kb on + strand, within RR42_RS21260 at 96.353 kb on + strand, within RR42_RS21260 at 96.353 kb on + strand, within RR42_RS21260 at 96.354 kb on - strand, within RR42_RS21260 at 96.355 kb on + strand, within RR42_RS21260 at 96.355 kb on + strand, within RR42_RS21260 at 96.356 kb on - strand, within RR42_RS21260 at 96.644 kb on + strand, within RR42_RS21260 at 96.645 kb on - strand, within RR42_RS21260 at 96.645 kb on - strand, within RR42_RS21260 at 96.868 kb on + strand at 96.868 kb on + strand at 96.952 kb on + strand at 96.953 kb on - strand at 96.953 kb on - strand at 97.194 kb on - strand, within RR42_RS21265 at 97.233 kb on + strand, within RR42_RS21265 at 97.299 kb on + strand, within RR42_RS21265 at 97.299 kb on + strand, within RR42_RS21265 at 97.299 kb on + strand, within RR42_RS21265 at 97.300 kb on - strand, within RR42_RS21265 at 97.437 kb on + strand, within RR42_RS21265 at 97.437 kb on + strand, within RR42_RS21265 at 97.437 kb on + strand, within RR42_RS21265 at 97.437 kb on + strand, within RR42_RS21265 at 97.437 kb on + strand, within RR42_RS21265 at 97.437 kb on + strand, within RR42_RS21265 at 97.437 kb on + strand, within RR42_RS21265 at 97.437 kb on + strand, within RR42_RS21265 at 97.437 kb on + strand, within RR42_RS21265 at 97.438 kb on - strand, within RR42_RS21265 at 97.438 kb on - strand, within RR42_RS21265 at 97.438 kb on - strand, within RR42_RS21265 at 97.438 kb on - strand, within RR42_RS21265 at 97.525 kb on - strand, within RR42_RS21265 at 97.978 kb on + strand at 97.979 kb on - strand at 98.002 kb on + strand at 98.002 kb on + strand at 98.003 kb on - strand at 98.006 kb on - strand at 98.079 kb on + strand at 98.080 kb on - strand at 98.640 kb on + strand at 98.640 kb on + strand at 98.640 kb on + strand at 98.641 kb on - strand at 98.641 kb on - strand at 98.641 kb on - strand at 98.844 kb on + strand, within RR42_RS21275 at 98.845 kb on - strand, within RR42_RS21275 at 98.845 kb on - strand, within RR42_RS21275 at 98.944 kb on + strand, within RR42_RS21275 at 98.944 kb on + strand, within RR42_RS21275 at 98.945 kb on - strand, within RR42_RS21275 at 98.945 kb on - strand, within RR42_RS21275
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 95,969 + RR42_RS21260 0.50 -0.3 95,969 + RR42_RS21260 0.50 +0.2 96,251 + RR42_RS21260 0.66 -0.8 96,353 + RR42_RS21260 0.72 -0.6 96,353 + RR42_RS21260 0.72 -1.9 96,354 - RR42_RS21260 0.72 +0.3 96,355 + RR42_RS21260 0.72 +0.4 96,355 + RR42_RS21260 0.72 -1.1 96,356 - RR42_RS21260 0.72 -0.9 96,644 + RR42_RS21260 0.88 -2.2 96,645 - RR42_RS21260 0.88 -0.3 96,645 - RR42_RS21260 0.88 -0.3 96,868 + +1.0 96,868 + +1.5 96,952 + -0.5 96,953 - -1.3 96,953 - +0.3 97,194 - RR42_RS21265 0.23 +0.0 97,233 + RR42_RS21265 0.27 -2.8 97,299 + RR42_RS21265 0.34 -2.2 97,299 + RR42_RS21265 0.34 -1.1 97,299 + RR42_RS21265 0.34 +0.4 97,300 - RR42_RS21265 0.34 -1.7 97,437 + RR42_RS21265 0.48 -1.4 97,437 + RR42_RS21265 0.48 +0.0 97,437 + RR42_RS21265 0.48 +0.5 97,437 + RR42_RS21265 0.48 -1.3 97,437 + RR42_RS21265 0.48 -1.0 97,437 + RR42_RS21265 0.48 -2.4 97,437 + RR42_RS21265 0.48 +0.5 97,437 + RR42_RS21265 0.48 -0.2 97,437 + RR42_RS21265 0.48 +1.8 97,438 - RR42_RS21265 0.48 +0.2 97,438 - RR42_RS21265 0.48 +1.1 97,438 - RR42_RS21265 0.48 +1.1 97,438 - RR42_RS21265 0.48 -0.3 97,525 - RR42_RS21265 0.57 -0.9 97,978 + -0.4 97,979 - +0.2 98,002 + -0.5 98,002 + -1.3 98,003 - +0.7 98,006 - +0.3 98,079 + -0.4 98,080 - +1.5 98,640 + -0.5 98,640 + -1.0 98,640 + -1.9 98,641 - -0.8 98,641 - +0.7 98,641 - -1.1 98,844 + RR42_RS21275 0.16 +0.9 98,845 - RR42_RS21275 0.16 -0.5 98,845 - RR42_RS21275 0.16 -0.0 98,944 + RR42_RS21275 0.25 -2.6 98,944 + RR42_RS21275 0.25 -2.6 98,945 - RR42_RS21275 0.25 -0.2 98,945 - RR42_RS21275 0.25 -0.9
Or see this region's nucleotide sequence