Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21260

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21255 and RR42_RS21260 are separated by 118 nucleotidesRR42_RS21260 and RR42_RS21265 are separated by 106 nucleotides RR42_RS21255: RR42_RS21255 - LysR family transcriptional regulator, at 94,069 to 94,947 _RS21255 RR42_RS21260: RR42_RS21260 - isovaleryl-CoA dehydrogenase, at 95,066 to 96,862 _RS21260 RR42_RS21265: RR42_RS21265 - ABC transporter substrate-binding protein, at 96,969 to 97,949 _RS21265 Position (kb) 95 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 94.142 kb on + strandat 94.142 kb on + strandat 94.143 kb on - strandat 94.143 kb on - strandat 94.143 kb on - strandat 94.143 kb on - strandat 94.301 kb on + strand, within RR42_RS21255at 94.340 kb on + strand, within RR42_RS21255at 94.340 kb on + strand, within RR42_RS21255at 94.341 kb on - strand, within RR42_RS21255at 94.344 kb on - strand, within RR42_RS21255at 94.471 kb on + strand, within RR42_RS21255at 94.640 kb on + strand, within RR42_RS21255at 94.641 kb on - strand, within RR42_RS21255at 94.842 kb on + strand, within RR42_RS21255at 94.842 kb on + strand, within RR42_RS21255at 94.925 kb on + strandat 94.962 kb on + strandat 95.010 kb on + strandat 95.013 kb on + strandat 95.013 kb on + strandat 95.013 kb on + strandat 95.014 kb on - strandat 95.027 kb on + strandat 95.060 kb on + strandat 95.061 kb on - strandat 95.061 kb on - strandat 95.198 kb on + strandat 95.198 kb on + strandat 95.199 kb on - strandat 95.287 kb on + strand, within RR42_RS21260at 95.287 kb on + strand, within RR42_RS21260at 95.369 kb on + strand, within RR42_RS21260at 95.369 kb on + strand, within RR42_RS21260at 95.369 kb on + strand, within RR42_RS21260at 95.474 kb on + strand, within RR42_RS21260at 95.475 kb on - strand, within RR42_RS21260at 95.475 kb on - strand, within RR42_RS21260at 95.486 kb on + strand, within RR42_RS21260at 95.486 kb on + strand, within RR42_RS21260at 95.486 kb on + strand, within RR42_RS21260at 95.486 kb on + strand, within RR42_RS21260at 95.486 kb on + strand, within RR42_RS21260at 95.630 kb on + strand, within RR42_RS21260at 95.888 kb on + strand, within RR42_RS21260at 95.888 kb on + strand, within RR42_RS21260at 95.888 kb on + strand, within RR42_RS21260at 95.969 kb on + strand, within RR42_RS21260at 95.969 kb on + strand, within RR42_RS21260at 96.251 kb on + strand, within RR42_RS21260at 96.353 kb on + strand, within RR42_RS21260at 96.353 kb on + strand, within RR42_RS21260at 96.354 kb on - strand, within RR42_RS21260at 96.355 kb on + strand, within RR42_RS21260at 96.355 kb on + strand, within RR42_RS21260at 96.356 kb on - strand, within RR42_RS21260at 96.644 kb on + strand, within RR42_RS21260at 96.645 kb on - strand, within RR42_RS21260at 96.645 kb on - strand, within RR42_RS21260at 96.868 kb on + strandat 96.868 kb on + strandat 96.952 kb on + strandat 96.953 kb on - strandat 96.953 kb on - strandat 97.194 kb on - strand, within RR42_RS21265at 97.233 kb on + strand, within RR42_RS21265at 97.299 kb on + strand, within RR42_RS21265at 97.299 kb on + strand, within RR42_RS21265at 97.299 kb on + strand, within RR42_RS21265at 97.300 kb on - strand, within RR42_RS21265at 97.437 kb on + strand, within RR42_RS21265at 97.437 kb on + strand, within RR42_RS21265at 97.437 kb on + strand, within RR42_RS21265at 97.437 kb on + strand, within RR42_RS21265at 97.437 kb on + strand, within RR42_RS21265at 97.437 kb on + strand, within RR42_RS21265at 97.437 kb on + strand, within RR42_RS21265at 97.437 kb on + strand, within RR42_RS21265at 97.437 kb on + strand, within RR42_RS21265at 97.438 kb on - strand, within RR42_RS21265at 97.438 kb on - strand, within RR42_RS21265at 97.438 kb on - strand, within RR42_RS21265at 97.438 kb on - strand, within RR42_RS21265at 97.525 kb on - strand, within RR42_RS21265

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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94,142 + -2.2
94,142 + +0.7
94,143 - -2.3
94,143 - -0.2
94,143 - -1.7
94,143 - +0.7
94,301 + RR42_RS21255 0.26 +0.2
94,340 + RR42_RS21255 0.31 -0.7
94,340 + RR42_RS21255 0.31 +0.7
94,341 - RR42_RS21255 0.31 -0.1
94,344 - RR42_RS21255 0.31 +0.6
94,471 + RR42_RS21255 0.46 -1.7
94,640 + RR42_RS21255 0.65 +0.3
94,641 - RR42_RS21255 0.65 +1.5
94,842 + RR42_RS21255 0.88 +1.3
94,842 + RR42_RS21255 0.88 -1.9
94,925 + +0.7
94,962 + +0.4
95,010 + -1.0
95,013 + -2.2
95,013 + -0.2
95,013 + -0.7
95,014 - -1.1
95,027 + +0.8
95,060 + -1.2
95,061 - -0.2
95,061 - +1.0
95,198 + +1.9
95,198 + -0.8
95,199 - +0.2
95,287 + RR42_RS21260 0.12 -2.7
95,287 + RR42_RS21260 0.12 +0.2
95,369 + RR42_RS21260 0.17 +1.3
95,369 + RR42_RS21260 0.17 +0.2
95,369 + RR42_RS21260 0.17 +0.1
95,474 + RR42_RS21260 0.23 +1.3
95,475 - RR42_RS21260 0.23 -1.7
95,475 - RR42_RS21260 0.23 -0.8
95,486 + RR42_RS21260 0.23 -0.2
95,486 + RR42_RS21260 0.23 -0.5
95,486 + RR42_RS21260 0.23 +1.3
95,486 + RR42_RS21260 0.23 -3.1
95,486 + RR42_RS21260 0.23 +0.4
95,630 + RR42_RS21260 0.31 -1.2
95,888 + RR42_RS21260 0.46 -1.7
95,888 + RR42_RS21260 0.46 -0.3
95,888 + RR42_RS21260 0.46 -1.3
95,969 + RR42_RS21260 0.50 -0.3
95,969 + RR42_RS21260 0.50 +0.2
96,251 + RR42_RS21260 0.66 -0.8
96,353 + RR42_RS21260 0.72 -0.6
96,353 + RR42_RS21260 0.72 -1.9
96,354 - RR42_RS21260 0.72 +0.3
96,355 + RR42_RS21260 0.72 +0.4
96,355 + RR42_RS21260 0.72 -1.1
96,356 - RR42_RS21260 0.72 -0.9
96,644 + RR42_RS21260 0.88 -2.2
96,645 - RR42_RS21260 0.88 -0.3
96,645 - RR42_RS21260 0.88 -0.3
96,868 + +1.0
96,868 + +1.5
96,952 + -0.5
96,953 - -1.3
96,953 - +0.3
97,194 - RR42_RS21265 0.23 +0.0
97,233 + RR42_RS21265 0.27 -2.8
97,299 + RR42_RS21265 0.34 -2.2
97,299 + RR42_RS21265 0.34 -1.1
97,299 + RR42_RS21265 0.34 +0.4
97,300 - RR42_RS21265 0.34 -1.7
97,437 + RR42_RS21265 0.48 -1.4
97,437 + RR42_RS21265 0.48 +0.0
97,437 + RR42_RS21265 0.48 +0.5
97,437 + RR42_RS21265 0.48 -1.3
97,437 + RR42_RS21265 0.48 -1.0
97,437 + RR42_RS21265 0.48 -2.4
97,437 + RR42_RS21265 0.48 +0.5
97,437 + RR42_RS21265 0.48 -0.2
97,437 + RR42_RS21265 0.48 +1.8
97,438 - RR42_RS21265 0.48 +0.2
97,438 - RR42_RS21265 0.48 +1.1
97,438 - RR42_RS21265 0.48 +1.1
97,438 - RR42_RS21265 0.48 -0.3
97,525 - RR42_RS21265 0.57 -0.9

Or see this region's nucleotide sequence