Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21185

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21175 and RR42_RS21180 are separated by 54 nucleotidesRR42_RS21180 and RR42_RS21185 are separated by 172 nucleotidesRR42_RS21185 and RR42_RS21190 are separated by 58 nucleotidesRR42_RS21190 and RR42_RS21195 are separated by 67 nucleotides RR42_RS21175: RR42_RS21175 - transporter, at 76,036 to 76,470 _RS21175 RR42_RS21180: RR42_RS21180 - GNAT family acetyltransferase, at 76,525 to 76,914 _RS21180 RR42_RS21185: RR42_RS21185 - AMP nucleosidase, at 77,087 to 78,583 _RS21185 RR42_RS21190: RR42_RS21190 - LysR family transcriptional regulator, at 78,642 to 79,085 _RS21190 RR42_RS21195: RR42_RS21195 - phosphohydrolase, at 79,153 to 79,848 _RS21195 Position (kb) 77 78 79Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 76.211 kb on + strand, within RR42_RS21175at 76.211 kb on + strand, within RR42_RS21175at 76.211 kb on + strand, within RR42_RS21175at 76.212 kb on - strand, within RR42_RS21175at 76.715 kb on + strand, within RR42_RS21180at 76.938 kb on - strandat 77.020 kb on + strandat 77.020 kb on + strandat 77.083 kb on + strandat 77.189 kb on + strandat 77.273 kb on + strand, within RR42_RS21185at 77.360 kb on + strand, within RR42_RS21185at 77.360 kb on + strand, within RR42_RS21185at 77.400 kb on - strand, within RR42_RS21185at 77.402 kb on + strand, within RR42_RS21185at 77.428 kb on - strand, within RR42_RS21185at 77.519 kb on + strand, within RR42_RS21185at 77.519 kb on + strand, within RR42_RS21185at 77.520 kb on - strand, within RR42_RS21185at 77.520 kb on - strand, within RR42_RS21185at 77.600 kb on + strand, within RR42_RS21185at 77.600 kb on + strand, within RR42_RS21185at 77.601 kb on - strand, within RR42_RS21185at 77.601 kb on - strand, within RR42_RS21185at 77.679 kb on - strand, within RR42_RS21185at 77.679 kb on - strand, within RR42_RS21185at 77.679 kb on - strand, within RR42_RS21185at 77.685 kb on - strand, within RR42_RS21185at 77.685 kb on - strand, within RR42_RS21185at 77.735 kb on + strand, within RR42_RS21185at 77.735 kb on + strand, within RR42_RS21185at 77.735 kb on + strand, within RR42_RS21185at 77.744 kb on + strand, within RR42_RS21185at 77.814 kb on - strand, within RR42_RS21185at 77.912 kb on + strand, within RR42_RS21185at 77.913 kb on - strand, within RR42_RS21185at 78.077 kb on + strand, within RR42_RS21185at 78.078 kb on - strand, within RR42_RS21185at 78.095 kb on + strand, within RR42_RS21185at 78.095 kb on + strand, within RR42_RS21185at 78.095 kb on + strand, within RR42_RS21185at 78.095 kb on + strand, within RR42_RS21185at 78.095 kb on + strand, within RR42_RS21185at 78.095 kb on + strand, within RR42_RS21185at 78.096 kb on - strand, within RR42_RS21185at 78.096 kb on - strand, within RR42_RS21185at 78.099 kb on + strand, within RR42_RS21185at 78.099 kb on + strand, within RR42_RS21185at 78.100 kb on - strand, within RR42_RS21185at 78.100 kb on - strand, within RR42_RS21185at 78.296 kb on + strand, within RR42_RS21185at 78.396 kb on + strand, within RR42_RS21185at 78.396 kb on + strand, within RR42_RS21185at 78.396 kb on + strand, within RR42_RS21185at 78.396 kb on + strand, within RR42_RS21185at 78.397 kb on - strand, within RR42_RS21185at 78.397 kb on - strand, within RR42_RS21185at 78.459 kb on - strandat 78.481 kb on + strandat 78.481 kb on + strandat 78.482 kb on - strandat 78.482 kb on - strandat 78.482 kb on - strandat 78.482 kb on - strandat 78.482 kb on - strandat 78.582 kb on - strandat 78.734 kb on + strand, within RR42_RS21190at 78.735 kb on - strand, within RR42_RS21190at 78.735 kb on - strand, within RR42_RS21190at 78.735 kb on - strand, within RR42_RS21190at 78.784 kb on + strand, within RR42_RS21190at 78.784 kb on + strand, within RR42_RS21190at 78.785 kb on - strand, within RR42_RS21190at 78.785 kb on - strand, within RR42_RS21190at 78.823 kb on + strand, within RR42_RS21190at 78.824 kb on - strand, within RR42_RS21190at 78.971 kb on - strand, within RR42_RS21190at 79.096 kb on + strandat 79.097 kb on - strandat 79.097 kb on - strandat 79.097 kb on - strandat 79.097 kb on - strandat 79.106 kb on - strandat 79.159 kb on - strandat 79.310 kb on + strand, within RR42_RS21195at 79.364 kb on + strand, within RR42_RS21195at 79.439 kb on + strand, within RR42_RS21195at 79.439 kb on + strand, within RR42_RS21195at 79.439 kb on + strand, within RR42_RS21195at 79.439 kb on + strand, within RR42_RS21195at 79.439 kb on + strand, within RR42_RS21195at 79.439 kb on + strand, within RR42_RS21195at 79.440 kb on - strand, within RR42_RS21195at 79.440 kb on - strand, within RR42_RS21195

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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76,211 + RR42_RS21175 0.40 +0.1
76,211 + RR42_RS21175 0.40 +0.2
76,211 + RR42_RS21175 0.40 -2.7
76,212 - RR42_RS21175 0.40 -0.5
76,715 + RR42_RS21180 0.49 +1.0
76,938 - +0.3
77,020 + -1.0
77,020 + -2.3
77,083 + -2.6
77,189 + -1.0
77,273 + RR42_RS21185 0.12 +1.3
77,360 + RR42_RS21185 0.18 +0.0
77,360 + RR42_RS21185 0.18 +0.1
77,400 - RR42_RS21185 0.21 +0.5
77,402 + RR42_RS21185 0.21 +0.2
77,428 - RR42_RS21185 0.23 +0.0
77,519 + RR42_RS21185 0.29 +1.8
77,519 + RR42_RS21185 0.29 +0.1
77,520 - RR42_RS21185 0.29 +0.7
77,520 - RR42_RS21185 0.29 -1.2
77,600 + RR42_RS21185 0.34 -1.3
77,600 + RR42_RS21185 0.34 -0.6
77,601 - RR42_RS21185 0.34 -0.4
77,601 - RR42_RS21185 0.34 -0.3
77,679 - RR42_RS21185 0.40 +0.1
77,679 - RR42_RS21185 0.40 +2.1
77,679 - RR42_RS21185 0.40 +1.3
77,685 - RR42_RS21185 0.40 +0.3
77,685 - RR42_RS21185 0.40 -1.2
77,735 + RR42_RS21185 0.43 -0.7
77,735 + RR42_RS21185 0.43 -0.7
77,735 + RR42_RS21185 0.43 -0.2
77,744 + RR42_RS21185 0.44 +1.7
77,814 - RR42_RS21185 0.49 +2.3
77,912 + RR42_RS21185 0.55 +0.8
77,913 - RR42_RS21185 0.55 +1.3
78,077 + RR42_RS21185 0.66 -0.3
78,078 - RR42_RS21185 0.66 -0.1
78,095 + RR42_RS21185 0.67 -0.7
78,095 + RR42_RS21185 0.67 -0.0
78,095 + RR42_RS21185 0.67 -0.7
78,095 + RR42_RS21185 0.67 +0.4
78,095 + RR42_RS21185 0.67 -0.2
78,095 + RR42_RS21185 0.67 -0.9
78,096 - RR42_RS21185 0.67 -2.8
78,096 - RR42_RS21185 0.67 -1.5
78,099 + RR42_RS21185 0.68 -1.7
78,099 + RR42_RS21185 0.68 -1.8
78,100 - RR42_RS21185 0.68 -0.0
78,100 - RR42_RS21185 0.68 -0.5
78,296 + RR42_RS21185 0.81 +0.1
78,396 + RR42_RS21185 0.87 -0.9
78,396 + RR42_RS21185 0.87 -0.5
78,396 + RR42_RS21185 0.87 -0.4
78,396 + RR42_RS21185 0.87 -0.1
78,397 - RR42_RS21185 0.88 -1.1
78,397 - RR42_RS21185 0.88 -1.4
78,459 - -0.4
78,481 + -1.1
78,481 + +2.0
78,482 - +0.3
78,482 - +0.7
78,482 - +0.9
78,482 - -0.3
78,482 - +1.6
78,582 - +0.8
78,734 + RR42_RS21190 0.21 -1.8
78,735 - RR42_RS21190 0.21 -3.7
78,735 - RR42_RS21190 0.21 +1.0
78,735 - RR42_RS21190 0.21 +0.7
78,784 + RR42_RS21190 0.32 -0.1
78,784 + RR42_RS21190 0.32 +1.9
78,785 - RR42_RS21190 0.32 -0.1
78,785 - RR42_RS21190 0.32 -0.7
78,823 + RR42_RS21190 0.41 -1.6
78,824 - RR42_RS21190 0.41 +1.1
78,971 - RR42_RS21190 0.74 -0.7
79,096 + -1.1
79,097 - -2.3
79,097 - +0.8
79,097 - -0.8
79,097 - +0.1
79,106 - +0.4
79,159 - -1.3
79,310 + RR42_RS21195 0.23 +0.9
79,364 + RR42_RS21195 0.30 -0.1
79,439 + RR42_RS21195 0.41 +0.0
79,439 + RR42_RS21195 0.41 +0.7
79,439 + RR42_RS21195 0.41 +0.9
79,439 + RR42_RS21195 0.41 -0.3
79,439 + RR42_RS21195 0.41 -1.3
79,439 + RR42_RS21195 0.41 -1.4
79,440 - RR42_RS21195 0.41 +1.0
79,440 - RR42_RS21195 0.41 +0.3

Or see this region's nucleotide sequence