Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21110

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21100 and RR42_RS21105 are separated by 196 nucleotidesRR42_RS21105 and RR42_RS21110 overlap by 4 nucleotidesRR42_RS21110 and RR42_RS21115 are separated by 571 nucleotides RR42_RS21100: RR42_RS21100 - hypothetical protein, at 59,142 to 60,599 _RS21100 RR42_RS21105: RR42_RS21105 - periplasmic protein, at 60,796 to 61,251 _RS21105 RR42_RS21110: RR42_RS21110 - peptidase C39, at 61,248 to 61,943 _RS21110 RR42_RS21115: RR42_RS21115 - flagellin, at 62,515 to 63,195 _RS21115 Position (kb) 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 60.447 kb on + strand, within RR42_RS21100at 60.447 kb on + strand, within RR42_RS21100at 60.447 kb on + strand, within RR42_RS21100at 60.447 kb on + strand, within RR42_RS21100at 60.447 kb on + strand, within RR42_RS21100at 60.447 kb on + strand, within RR42_RS21100at 60.447 kb on + strand, within RR42_RS21100at 60.448 kb on - strand, within RR42_RS21100at 60.448 kb on - strand, within RR42_RS21100at 60.448 kb on - strand, within RR42_RS21100at 60.448 kb on - strand, within RR42_RS21100at 60.470 kb on + strandat 60.470 kb on + strandat 60.470 kb on + strandat 60.470 kb on + strandat 60.470 kb on + strandat 60.470 kb on + strandat 60.471 kb on - strandat 60.471 kb on - strandat 60.471 kb on - strandat 60.471 kb on - strandat 60.597 kb on + strandat 60.597 kb on + strandat 60.598 kb on - strandat 60.681 kb on + strandat 60.681 kb on + strandat 60.682 kb on - strandat 61.277 kb on + strandat 61.277 kb on + strandat 61.323 kb on + strand, within RR42_RS21110at 61.324 kb on - strand, within RR42_RS21110at 61.356 kb on + strand, within RR42_RS21110at 61.356 kb on + strand, within RR42_RS21110at 61.357 kb on - strand, within RR42_RS21110at 61.357 kb on - strand, within RR42_RS21110at 61.392 kb on + strand, within RR42_RS21110at 61.416 kb on + strand, within RR42_RS21110at 61.417 kb on - strand, within RR42_RS21110at 61.461 kb on + strand, within RR42_RS21110at 61.462 kb on - strand, within RR42_RS21110at 61.462 kb on - strand, within RR42_RS21110at 61.462 kb on - strand, within RR42_RS21110at 61.462 kb on - strand, within RR42_RS21110at 61.509 kb on + strand, within RR42_RS21110at 61.509 kb on + strand, within RR42_RS21110at 61.509 kb on + strand, within RR42_RS21110at 61.510 kb on - strand, within RR42_RS21110at 61.510 kb on - strand, within RR42_RS21110at 61.661 kb on - strand, within RR42_RS21110at 61.872 kb on + strand, within RR42_RS21110at 61.941 kb on + strandat 61.941 kb on + strandat 61.941 kb on + strandat 61.941 kb on + strandat 61.942 kb on - strandat 61.942 kb on - strandat 62.100 kb on - strandat 62.124 kb on + strandat 62.164 kb on + strandat 62.382 kb on - strandat 62.492 kb on + strandat 62.493 kb on - strandat 62.703 kb on + strand, within RR42_RS21115at 62.703 kb on + strand, within RR42_RS21115at 62.704 kb on - strand, within RR42_RS21115at 62.704 kb on - strand, within RR42_RS21115at 62.704 kb on - strand, within RR42_RS21115at 62.706 kb on + strand, within RR42_RS21115at 62.706 kb on + strand, within RR42_RS21115at 62.707 kb on - strand, within RR42_RS21115at 62.707 kb on - strand, within RR42_RS21115at 62.851 kb on - strand, within RR42_RS21115at 62.871 kb on + strand, within RR42_RS21115at 62.872 kb on - strand, within RR42_RS21115at 62.872 kb on - strand, within RR42_RS21115at 62.872 kb on - strand, within RR42_RS21115

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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60,447 + RR42_RS21100 0.90 -0.2
60,447 + RR42_RS21100 0.90 -0.5
60,447 + RR42_RS21100 0.90 -0.4
60,447 + RR42_RS21100 0.90 +1.4
60,447 + RR42_RS21100 0.90 -2.7
60,447 + RR42_RS21100 0.90 +0.1
60,447 + RR42_RS21100 0.90 -0.5
60,448 - RR42_RS21100 0.90 -0.3
60,448 - RR42_RS21100 0.90 -1.7
60,448 - RR42_RS21100 0.90 -0.7
60,448 - RR42_RS21100 0.90 +0.1
60,470 + +1.2
60,470 + -1.1
60,470 + +0.3
60,470 + -0.4
60,470 + +0.1
60,470 + +0.3
60,471 - -0.3
60,471 - +2.3
60,471 - +0.3
60,471 - -0.9
60,597 + -1.3
60,597 + -1.7
60,598 - -0.6
60,681 + -0.9
60,681 + +0.8
60,682 - -0.8
61,277 + +0.4
61,277 + +2.1
61,323 + RR42_RS21110 0.11 -1.4
61,324 - RR42_RS21110 0.11 -1.3
61,356 + RR42_RS21110 0.16 +2.1
61,356 + RR42_RS21110 0.16 -2.2
61,357 - RR42_RS21110 0.16 -0.3
61,357 - RR42_RS21110 0.16 -1.6
61,392 + RR42_RS21110 0.21 +0.0
61,416 + RR42_RS21110 0.24 -1.8
61,417 - RR42_RS21110 0.24 -0.4
61,461 + RR42_RS21110 0.31 +0.5
61,462 - RR42_RS21110 0.31 +0.1
61,462 - RR42_RS21110 0.31 +0.2
61,462 - RR42_RS21110 0.31 +1.7
61,462 - RR42_RS21110 0.31 +0.3
61,509 + RR42_RS21110 0.38 +0.2
61,509 + RR42_RS21110 0.38 +0.4
61,509 + RR42_RS21110 0.38 -0.7
61,510 - RR42_RS21110 0.38 -3.1
61,510 - RR42_RS21110 0.38 +0.6
61,661 - RR42_RS21110 0.59 -1.1
61,872 + RR42_RS21110 0.90 -1.6
61,941 + +1.5
61,941 + -1.8
61,941 + +0.8
61,941 + -0.2
61,942 - +1.5
61,942 - +0.9
62,100 - -0.4
62,124 + +0.3
62,164 + -0.9
62,382 - +0.3
62,492 + +2.0
62,493 - -0.1
62,703 + RR42_RS21115 0.28 -2.0
62,703 + RR42_RS21115 0.28 -2.7
62,704 - RR42_RS21115 0.28 +0.5
62,704 - RR42_RS21115 0.28 -0.6
62,704 - RR42_RS21115 0.28 +2.4
62,706 + RR42_RS21115 0.28 +0.2
62,706 + RR42_RS21115 0.28 -0.2
62,707 - RR42_RS21115 0.28 -0.1
62,707 - RR42_RS21115 0.28 -1.3
62,851 - RR42_RS21115 0.49 +1.3
62,871 + RR42_RS21115 0.52 -1.6
62,872 - RR42_RS21115 0.52 -1.3
62,872 - RR42_RS21115 0.52 +0.4
62,872 - RR42_RS21115 0.52 +0.5

Or see this region's nucleotide sequence