Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20520

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
4,445,673	+		RR42_RS20515	0.84	-1.2
4,445,673	+		RR42_RS20515	0.84	-1.2
4,445,674	-		RR42_RS20515	0.84	-0.9
4,445,674	-		RR42_RS20515	0.84	+2.6
4,445,675	+		RR42_RS20515	0.84	+0.1
4,445,675	+		RR42_RS20515	0.84	+0.4
4,445,675	+		RR42_RS20515	0.84	-1.1
4,445,676	-		RR42_RS20515	0.84	-1.2
4,445,676	-		RR42_RS20515	0.84	-1.1
4,445,676	-		RR42_RS20515	0.84	-0.2
4,445,774	+		RR42_RS20515	0.88	-1.4
4,445,774	+		RR42_RS20515	0.88	+0.1
4,445,775	-		RR42_RS20515	0.89	-2.1
4,445,775	-		RR42_RS20515	0.89	-0.3
4,445,858	+				-2.0
4,445,858	+				-1.9
4,445,858	+				+0.2
4,445,859	-				-1.4
4,445,859	-				-0.3
4,445,859	-				-1.9
4,445,859	-				+0.2
4,445,861	+				+0.9
4,445,879	+				-2.4
4,445,880	-				+0.2
4,445,883	+				-2.7
4,445,883	+				-1.5
4,445,883	+				+0.3
4,445,884	-				-0.3
4,445,884	-				-1.1
4,445,884	-				-0.5
4,445,884	-				-0.4
4,445,884	-				+0.8
4,445,884	-				-2.6
4,445,884	-				-0.6
4,445,884	-				-0.1
4,445,884	-				-0.6
4,445,884	-				-0.7
4,446,251	+				+0.7
4,446,252	-				+1.8
4,446,252	-				-0.7
4,446,286	+				-0.9
4,446,286	+				-0.9
4,446,287	-				-1.0
4,446,287	-				-1.9
4,446,289	+				-0.4
4,446,289	+				-0.8
4,446,289	+				+0.3
4,446,289	+				+1.3
4,446,289	+				+0.5
4,446,289	+				-0.5
4,446,289	+				-1.8
4,446,290	-				-0.2
4,446,290	-				+1.0
4,446,290	-				+1.2
4,446,290	-				-0.7
4,446,326	-				+0.5
4,446,326	-				-2.5
4,446,343	-				-0.5
4,446,345	+				+0.5
4,446,486	-				-0.6
4,446,536	+				-1.0
4,446,569	+		RR42_RS20520	0.12	-0.9
4,446,570	-		RR42_RS20520	0.12	+0.5
4,446,570	-		RR42_RS20520	0.12	+0.4
4,446,570	-		RR42_RS20520	0.12	-2.8
4,446,570	-		RR42_RS20520	0.12	-1.6
4,446,570	-		RR42_RS20520	0.12	+0.1
4,446,573	+		RR42_RS20520	0.12	-0.8
4,446,573	+		RR42_RS20520	0.12	-0.3
4,446,573	+		RR42_RS20520	0.12	+0.1
4,446,573	+		RR42_RS20520	0.12	+0.1
4,446,574	-		RR42_RS20520	0.12	-2.7
4,446,574	-		RR42_RS20520	0.12	+0.1
4,446,671	+		RR42_RS20520	0.19	-0.7
4,446,686	+		RR42_RS20520	0.20	-0.8
4,446,687	-		RR42_RS20520	0.20	-1.3
4,446,687	-		RR42_RS20520	0.20	-0.5
4,446,698	+		RR42_RS20520	0.21	+0.8
4,446,698	+		RR42_RS20520	0.21	-0.7
4,446,698	+		RR42_RS20520	0.21	-0.7
4,446,698	+		RR42_RS20520	0.21	-0.4
4,446,699	-		RR42_RS20520	0.21	-0.2
4,446,699	-		RR42_RS20520	0.21	-1.0
4,446,699	-		RR42_RS20520	0.21	+0.4
4,446,699	-		RR42_RS20520	0.21	-0.5
4,446,699	-		RR42_RS20520	0.21	-1.4
4,446,699	-		RR42_RS20520	0.21	-1.2
4,446,759	+		RR42_RS20520	0.25	-0.1
4,446,759	+		RR42_RS20520	0.25	+0.4
4,446,759	+		RR42_RS20520	0.25	+0.3
4,446,759	+		RR42_RS20520	0.25	-1.0
4,446,759	+		RR42_RS20520	0.25	-0.2
4,446,759	+		RR42_RS20520	0.25	-1.7
4,446,760	-		RR42_RS20520	0.25	-0.9
4,446,760	-		RR42_RS20520	0.25	-0.5
4,446,760	-		RR42_RS20520	0.25	-0.2
4,446,760	-		RR42_RS20520	0.25	-0.7
4,446,760	-		RR42_RS20520	0.25	+0.4
4,446,760	-		RR42_RS20520	0.25	-1.1
4,446,760	-		RR42_RS20520	0.25	-2.0
4,446,760	-		RR42_RS20520	0.25	-0.7
4,446,760	-		RR42_RS20520	0.25	-0.7
4,446,760	-		RR42_RS20520	0.25	-1.2
4,446,760	-		RR42_RS20520	0.25	-0.5
4,446,760	-		RR42_RS20520	0.25	-1.5
4,446,842	+		RR42_RS20520	0.31	-1.5
4,446,842	+		RR42_RS20520	0.31	-2.4
4,446,842	+		RR42_RS20520	0.31	+0.1
4,446,842	+		RR42_RS20520	0.31	-2.1
4,446,842	+		RR42_RS20520	0.31	-0.1
4,446,843	-		RR42_RS20520	0.31	-1.9
4,446,843	-		RR42_RS20520	0.31	+1.2
4,446,843	-		RR42_RS20520	0.31	+0.1
4,446,844	+		RR42_RS20520	0.31	+0.0
4,446,844	+		RR42_RS20520	0.31	-2.1
4,446,844	+		RR42_RS20520	0.31	+0.4
4,446,844	+		RR42_RS20520	0.31	+0.2
4,446,844	+		RR42_RS20520	0.31	-0.7
4,446,844	+		RR42_RS20520	0.31	-3.0
4,446,844	+		RR42_RS20520	0.31	-0.9
4,446,844	+		RR42_RS20520	0.31	-0.1
4,446,844	+		RR42_RS20520	0.31	-1.5
4,446,844	+		RR42_RS20520	0.31	+1.2
4,446,844	+		RR42_RS20520	0.31	-0.6
4,446,844	+		RR42_RS20520	0.31	-0.5
4,446,845	-		RR42_RS20520	0.31	-0.6
4,446,845	-		RR42_RS20520	0.31	-0.9
4,446,845	-		RR42_RS20520	0.31	-0.9
4,446,845	-		RR42_RS20520	0.31	-0.0
4,446,845	-		RR42_RS20520	0.31	-0.5
4,446,845	-		RR42_RS20520	0.31	+0.1
4,446,845	-		RR42_RS20520	0.31	+0.6
4,446,890	+		RR42_RS20520	0.35	-0.5
4,446,890	+		RR42_RS20520	0.35	+0.5
4,446,938	+		RR42_RS20520	0.38	-1.4
4,446,938	+		RR42_RS20520	0.38	-1.9
4,446,938	+		RR42_RS20520	0.38	-1.1
4,446,939	-		RR42_RS20520	0.38	+0.3
4,446,939	-		RR42_RS20520	0.38	-2.2
4,446,939	-		RR42_RS20520	0.38	-0.5
4,446,939	-		RR42_RS20520	0.38	-0.3
4,446,939	-		RR42_RS20520	0.38	-0.7
4,446,939	-		RR42_RS20520	0.38	+0.5
4,446,939	-		RR42_RS20520	0.38	-0.5
4,447,307	-		RR42_RS20520	0.64	-1.3
4,447,491	-		RR42_RS20520	0.77	-1.0
4,447,491	-		RR42_RS20520	0.77	+0.1
4,447,706	-				+0.7
4,448,116	+		RR42_RS20525	0.43	-1.9
4,448,117	-		RR42_RS20525	0.43	-0.4
4,448,117	-		RR42_RS20525	0.43	+1.0
4,448,117	-		RR42_RS20525	0.43	-1.7
4,448,117	-		RR42_RS20525	0.43	-1.0
4,448,117	-		RR42_RS20525	0.43	+0.0
4,448,117	-		RR42_RS20525	0.43	-2.5
4,448,153	-		RR42_RS20525	0.49	+0.5
4,448,224	+		RR42_RS20525	0.59	-0.0
4,448,224	+		RR42_RS20525	0.59	-1.7
4,448,224	+		RR42_RS20525	0.59	-1.4
4,448,224	+		RR42_RS20525	0.59	+0.3
4,448,225	-		RR42_RS20525	0.59	-1.3
4,448,225	-		RR42_RS20525	0.59	-1.7
4,448,225	-		RR42_RS20525	0.59	-1.1
4,448,564	+				+0.6
4,448,564	+				+0.3
4,448,565	-				+2.3
4,448,565	-				+0.7
4,448,568	+				+1.6
4,448,569	-				+0.1