Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20085

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
4,340,108	+		RR42_RS20080	0.35	-0.8
4,340,108	+		RR42_RS20080	0.35	+0.9
4,340,115	-		RR42_RS20080	0.35	-0.6
4,340,419	+		RR42_RS20080	0.57	-0.7
4,340,439	+		RR42_RS20080	0.59	+1.5
4,340,439	+		RR42_RS20080	0.59	+0.2
4,340,439	+		RR42_RS20080	0.59	-1.1
4,340,535	+		RR42_RS20080	0.66	-0.6
4,340,535	+		RR42_RS20080	0.66	+0.2
4,340,536	-		RR42_RS20080	0.66	+2.8
4,340,536	-		RR42_RS20080	0.66	-0.1
4,340,536	-		RR42_RS20080	0.66	-1.0
4,340,536	-		RR42_RS20080	0.66	-2.0
4,340,538	+		RR42_RS20080	0.66	+0.2
4,340,538	+		RR42_RS20080	0.66	-0.6
4,340,539	-		RR42_RS20080	0.66	+0.2
4,340,539	-		RR42_RS20080	0.66	+2.0
4,340,616	+		RR42_RS20080	0.72	-0.2
4,340,616	+		RR42_RS20080	0.72	-0.2
4,340,617	-		RR42_RS20080	0.72	+1.2
4,340,617	-		RR42_RS20080	0.72	-2.1
4,340,617	-		RR42_RS20080	0.72	-2.5
4,340,892	+				-0.9
4,340,892	+				+0.2
4,340,892	+				-1.5
4,340,892	+				-1.1
4,340,892	+				+0.1
4,340,892	+				+0.6
4,340,892	+				+0.7
4,340,892	+				+1.5
4,340,893	-				-2.5
4,340,893	-				-1.5
4,340,893	-				-1.7
4,340,893	-				+0.0
4,340,893	-				-2.2
4,340,893	-				+0.3
4,340,893	-				-1.9
4,340,956	-				+0.5
4,341,044	+				+1.7
4,341,045	-				+1.2
4,341,045	-				-0.2
4,341,045	-				-1.2
4,341,061	+				-1.1
4,341,119	-				+0.5
4,341,154	+		RR42_RS20085	0.18	-1.0
4,341,155	-		RR42_RS20085	0.18	-0.6
4,341,155	-		RR42_RS20085	0.18	+0.5
4,341,155	-		RR42_RS20085	0.18	+0.1
4,341,155	-		RR42_RS20085	0.18	+0.5
4,341,155	-		RR42_RS20085	0.18	-0.1
4,341,157	+		RR42_RS20085	0.19	+1.5
4,341,157	+		RR42_RS20085	0.19	+0.3
4,341,158	-		RR42_RS20085	0.19	-0.3
4,341,367	+		RR42_RS20085	0.83	-2.0
4,341,367	+		RR42_RS20085	0.83	+0.5
4,341,367	+		RR42_RS20085	0.83	-0.5
4,341,368	-		RR42_RS20085	0.84	+0.5
4,341,368	-		RR42_RS20085	0.84	-0.3
4,341,441	-				+0.2
4,341,447	+				+1.0
4,341,447	+				+0.8
4,341,448	-				+0.9
4,341,448	-				+0.0
4,341,448	-				-1.7
4,341,448	-				-1.6
4,341,517	+				-1.3
4,341,517	+				+0.4
4,341,517	+				+0.6
4,341,517	+				+1.1
4,341,517	+				-1.8
4,341,518	-				+1.0
4,341,518	-				-0.4
4,341,518	-				+2.5
4,341,518	-				+0.7
4,341,523	+				-0.6
4,341,523	+				+0.2
4,341,523	+				-0.9
4,341,523	+				-0.4
4,341,523	+				-0.2
4,341,523	+				-2.5
4,341,524	-				+0.2
4,341,524	-				-1.0
4,341,524	-				-0.8
4,341,524	-				-0.4
4,341,705	+		RR42_RS20090	0.31	+0.1
4,341,835	+		RR42_RS20090	0.49	-0.4
4,341,835	+		RR42_RS20090	0.49	-0.7
4,341,835	+		RR42_RS20090	0.49	+0.8
4,341,835	+		RR42_RS20090	0.49	-1.4
4,341,835	+		RR42_RS20090	0.49	-1.4
4,341,835	+		RR42_RS20090	0.49	+0.3
4,341,952	+		RR42_RS20090	0.65	-0.8
4,341,952	+		RR42_RS20090	0.65	+1.3
4,342,018	+		RR42_RS20090	0.74	-0.2
4,342,019	-		RR42_RS20090	0.74	-1.5
4,342,019	-		RR42_RS20090	0.74	-0.8
4,342,019	-		RR42_RS20090	0.74	-0.9
4,342,247	+				-0.5
4,342,296	-				-0.9
4,342,296	-				+0.0
4,342,321	-				+0.5
4,342,376	+		RR42_RS20095	0.14	-2.0
4,342,417	+		RR42_RS20095	0.22	+0.6
4,342,417	+		RR42_RS20095	0.22	-1.4
4,342,418	-		RR42_RS20095	0.22	+0.2