Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19780 and RR42_RS19785 are separated by 44 nucleotides RR42_RS19785 and RR42_RS19790 are separated by 425 nucleotides
RR42_RS19780: RR42_RS19780 - peptidase M20, at 4,268,150 to 4,269,418
_RS19780
RR42_RS19785: RR42_RS19785 - allantoate amidohydrolase, at 4,269,463 to 4,270,728
_RS19785
RR42_RS19790: RR42_RS19790 - C4-dicarboxylate ABC transporter, at 4,271,154 to 4,272,575
_RS19790
Position (kb) 4269
4270
4271 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4268.683 kb on - strand, within RR42_RS19780 at 4268.683 kb on - strand, within RR42_RS19780 at 4268.814 kb on + strand, within RR42_RS19780 at 4268.815 kb on - strand, within RR42_RS19780 at 4268.815 kb on - strand, within RR42_RS19780 at 4268.838 kb on + strand, within RR42_RS19780 at 4268.838 kb on + strand, within RR42_RS19780 at 4268.839 kb on - strand, within RR42_RS19780 at 4268.907 kb on + strand, within RR42_RS19780 at 4268.907 kb on + strand, within RR42_RS19780 at 4268.908 kb on - strand, within RR42_RS19780 at 4268.982 kb on + strand, within RR42_RS19780 at 4268.983 kb on - strand, within RR42_RS19780 at 4268.983 kb on - strand, within RR42_RS19780 at 4268.988 kb on + strand, within RR42_RS19780 at 4268.988 kb on + strand, within RR42_RS19780 at 4268.989 kb on - strand, within RR42_RS19780 at 4269.030 kb on + strand, within RR42_RS19780 at 4269.030 kb on + strand, within RR42_RS19780 at 4269.030 kb on + strand, within RR42_RS19780 at 4269.030 kb on + strand, within RR42_RS19780 at 4269.031 kb on - strand, within RR42_RS19780 at 4269.031 kb on - strand, within RR42_RS19780 at 4269.031 kb on - strand, within RR42_RS19780 at 4269.369 kb on + strand at 4269.369 kb on + strand at 4269.370 kb on - strand at 4269.464 kb on + strand at 4269.903 kb on + strand, within RR42_RS19785 at 4269.904 kb on - strand, within RR42_RS19785 at 4270.062 kb on + strand, within RR42_RS19785 at 4270.063 kb on - strand, within RR42_RS19785 at 4270.442 kb on + strand, within RR42_RS19785 at 4270.442 kb on + strand, within RR42_RS19785 at 4270.517 kb on + strand, within RR42_RS19785 at 4270.622 kb on + strand at 4270.622 kb on + strand at 4270.622 kb on + strand at 4270.622 kb on + strand at 4270.622 kb on + strand at 4270.861 kb on + strand at 4270.861 kb on + strand at 4270.880 kb on + strand at 4270.880 kb on + strand at 4270.880 kb on + strand at 4270.881 kb on - strand at 4270.881 kb on - strand at 4271.333 kb on + strand, within RR42_RS19790 at 4271.333 kb on + strand, within RR42_RS19790 at 4271.334 kb on - strand, within RR42_RS19790 at 4271.334 kb on - strand, within RR42_RS19790 at 4271.448 kb on + strand, within RR42_RS19790
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 4,268,683 - RR42_RS19780 0.42 -4.1 4,268,683 - RR42_RS19780 0.42 -2.9 4,268,814 + RR42_RS19780 0.52 -2.9 4,268,815 - RR42_RS19780 0.52 -2.6 4,268,815 - RR42_RS19780 0.52 -2.9 4,268,838 + RR42_RS19780 0.54 -1.9 4,268,838 + RR42_RS19780 0.54 -0.1 4,268,839 - RR42_RS19780 0.54 -2.9 4,268,907 + RR42_RS19780 0.60 -3.8 4,268,907 + RR42_RS19780 0.60 -3.9 4,268,908 - RR42_RS19780 0.60 -2.8 4,268,982 + RR42_RS19780 0.66 -3.9 4,268,983 - RR42_RS19780 0.66 -4.0 4,268,983 - RR42_RS19780 0.66 -3.7 4,268,988 + RR42_RS19780 0.66 +0.1 4,268,988 + RR42_RS19780 0.66 -3.0 4,268,989 - RR42_RS19780 0.66 -1.8 4,269,030 + RR42_RS19780 0.69 -0.5 4,269,030 + RR42_RS19780 0.69 -1.5 4,269,030 + RR42_RS19780 0.69 -3.3 4,269,030 + RR42_RS19780 0.69 -4.9 4,269,031 - RR42_RS19780 0.69 -3.5 4,269,031 - RR42_RS19780 0.69 -2.7 4,269,031 - RR42_RS19780 0.69 -2.5 4,269,369 + -0.1 4,269,369 + -3.4 4,269,370 - -2.5 4,269,464 + -2.7 4,269,903 + RR42_RS19785 0.35 -2.8 4,269,904 - RR42_RS19785 0.35 -2.5 4,270,062 + RR42_RS19785 0.47 -3.2 4,270,063 - RR42_RS19785 0.47 -2.2 4,270,442 + RR42_RS19785 0.77 -3.0 4,270,442 + RR42_RS19785 0.77 -1.9 4,270,517 + RR42_RS19785 0.83 -1.9 4,270,622 + -3.9 4,270,622 + -5.4 4,270,622 + -4.2 4,270,622 + -3.8 4,270,622 + -2.9 4,270,861 + -3.0 4,270,861 + -2.6 4,270,880 + -3.2 4,270,880 + -3.4 4,270,880 + -3.2 4,270,881 - -0.2 4,270,881 - -0.8 4,271,333 + RR42_RS19790 0.13 +0.9 4,271,333 + RR42_RS19790 0.13 -0.9 4,271,334 - RR42_RS19790 0.13 -2.8 4,271,334 - RR42_RS19790 0.13 -0.7 4,271,448 + RR42_RS19790 0.21 +0.1
Or see this region's nucleotide sequence