Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19295

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS19290 and RR42_RS19295 are separated by 77 nucleotidesRR42_RS19295 and RR42_RS19300 are separated by 119 nucleotidesRR42_RS19300 and RR42_RS19305 are separated by 226 nucleotides RR42_RS19290: RR42_RS19290 - elongation factor Tu, at 4,164,101 to 4,165,291 _RS19290 RR42_RS19295: RR42_RS19295 - elongation factor G, at 4,165,369 to 4,167,471 _RS19295 RR42_RS19300: RR42_RS19300 - 30S ribosomal protein S7, at 4,167,591 to 4,168,061 _RS19300 RR42_RS19305: RR42_RS19305 - 30S ribosomal protein S12, at 4,168,288 to 4,168,665 _RS19305 Position (kb) 4165 4166 4167 4168Strain fitness (log2 ratio) -3 -2 -1 0 1at 4165.367 kb on - strandat 4165.371 kb on - strandat 4165.371 kb on - strandat 4165.371 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
remove
4,165,367 - -2.6
4,165,371 - -1.4
4,165,371 - -1.9
4,165,371 - -3.7

Or see this region's nucleotide sequence