Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19040 and RR42_RS19045 are separated by 82 nucleotides RR42_RS19045 and RR42_RS19050 are separated by 420 nucleotides RR42_RS19050 and RR42_RS19055 are separated by 214 nucleotides RR42_RS19055 and RR42_RS19060 are separated by 14 nucleotides
RR42_RS19040: RR42_RS19040 - penicillin-binding protein, at 4,124,407 to 4,126,779
_RS19040
RR42_RS19045: RR42_RS19045 - frataxin, at 4,126,862 to 4,127,197
_RS19045
RR42_RS19050: RR42_RS19050 - diaminopimelate decarboxylase, at 4,127,618 to 4,128,886
_RS19050
RR42_RS19055: RR42_RS19055 - sulfite oxidase, at 4,129,101 to 4,129,781
_RS19055
RR42_RS19060: RR42_RS19060 - sulfoxide reductase catalytic subunit YedY, at 4,129,796 to 4,130,797
_RS19060
Position (kb) 4127
4128
4129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4126.911 kb on - strand, within RR42_RS19045 at 4127.230 kb on + strand at 4127.240 kb on + strand at 4127.260 kb on + strand at 4127.260 kb on + strand at 4127.351 kb on + strand at 4127.351 kb on + strand at 4127.491 kb on + strand at 4127.613 kb on + strand at 4128.884 kb on + strand at 4129.089 kb on + strand at 4129.089 kb on + strand at 4129.089 kb on + strand at 4129.090 kb on - strand at 4129.090 kb on - strand at 4129.090 kb on - strand at 4129.102 kb on + strand at 4129.103 kb on - strand at 4129.103 kb on - strand at 4129.103 kb on - strand at 4129.103 kb on - strand at 4129.183 kb on + strand, within RR42_RS19055 at 4129.191 kb on + strand, within RR42_RS19055 at 4129.220 kb on + strand, within RR42_RS19055 at 4129.220 kb on + strand, within RR42_RS19055 at 4129.220 kb on + strand, within RR42_RS19055 at 4129.220 kb on + strand, within RR42_RS19055 at 4129.221 kb on - strand, within RR42_RS19055 at 4129.231 kb on + strand, within RR42_RS19055 at 4129.231 kb on + strand, within RR42_RS19055 at 4129.231 kb on + strand, within RR42_RS19055 at 4129.231 kb on + strand, within RR42_RS19055 at 4129.231 kb on + strand, within RR42_RS19055 at 4129.232 kb on - strand, within RR42_RS19055 at 4129.232 kb on - strand, within RR42_RS19055 at 4129.232 kb on - strand, within RR42_RS19055 at 4129.261 kb on + strand, within RR42_RS19055 at 4129.261 kb on + strand, within RR42_RS19055 at 4129.261 kb on + strand, within RR42_RS19055 at 4129.261 kb on + strand, within RR42_RS19055 at 4129.300 kb on - strand, within RR42_RS19055 at 4129.408 kb on + strand, within RR42_RS19055 at 4129.408 kb on + strand, within RR42_RS19055 at 4129.408 kb on + strand, within RR42_RS19055 at 4129.408 kb on + strand, within RR42_RS19055 at 4129.408 kb on + strand, within RR42_RS19055 at 4129.409 kb on - strand, within RR42_RS19055 at 4129.465 kb on + strand, within RR42_RS19055 at 4129.465 kb on + strand, within RR42_RS19055 at 4129.465 kb on + strand, within RR42_RS19055 at 4129.827 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 4,126,911 - RR42_RS19045 0.15 -0.3 4,127,230 + +1.0 4,127,240 + +0.6 4,127,260 + +1.3 4,127,260 + +1.2 4,127,351 + -0.2 4,127,351 + -0.1 4,127,491 + -0.3 4,127,613 + -0.9 4,128,884 + -0.2 4,129,089 + -0.3 4,129,089 + +1.4 4,129,089 + +0.9 4,129,090 - +1.6 4,129,090 - +0.1 4,129,090 - +0.6 4,129,102 + +0.3 4,129,103 - -0.1 4,129,103 - +1.4 4,129,103 - +0.6 4,129,103 - -2.1 4,129,183 + RR42_RS19055 0.12 -0.5 4,129,191 + RR42_RS19055 0.13 +0.4 4,129,220 + RR42_RS19055 0.17 -2.7 4,129,220 + RR42_RS19055 0.17 -0.1 4,129,220 + RR42_RS19055 0.17 +0.1 4,129,220 + RR42_RS19055 0.17 +0.8 4,129,221 - RR42_RS19055 0.18 -0.6 4,129,231 + RR42_RS19055 0.19 -0.2 4,129,231 + RR42_RS19055 0.19 +0.4 4,129,231 + RR42_RS19055 0.19 +0.2 4,129,231 + RR42_RS19055 0.19 -2.2 4,129,231 + RR42_RS19055 0.19 +1.6 4,129,232 - RR42_RS19055 0.19 -1.7 4,129,232 - RR42_RS19055 0.19 +0.5 4,129,232 - RR42_RS19055 0.19 -1.9 4,129,261 + RR42_RS19055 0.23 +0.9 4,129,261 + RR42_RS19055 0.23 +0.1 4,129,261 + RR42_RS19055 0.23 -1.5 4,129,261 + RR42_RS19055 0.23 -0.6 4,129,300 - RR42_RS19055 0.29 +2.4 4,129,408 + RR42_RS19055 0.45 -0.1 4,129,408 + RR42_RS19055 0.45 -0.3 4,129,408 + RR42_RS19055 0.45 +1.1 4,129,408 + RR42_RS19055 0.45 -0.9 4,129,408 + RR42_RS19055 0.45 +0.2 4,129,409 - RR42_RS19055 0.45 -0.4 4,129,465 + RR42_RS19055 0.53 -3.0 4,129,465 + RR42_RS19055 0.53 -2.9 4,129,465 + RR42_RS19055 0.53 +1.4 4,129,827 + +0.3
Or see this region's nucleotide sequence