Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18365 and RR42_RS18370 are separated by 222 nucleotides RR42_RS18370 and RR42_RS18375 are separated by 92 nucleotides
RR42_RS18365: RR42_RS18365 - GTP-binding protein, at 3,980,507 to 3,981,598
_RS18365
RR42_RS18370: RR42_RS18370 - integrase, at 3,981,821 to 3,983,089
_RS18370
RR42_RS18375: RR42_RS18375 - hypothetical protein, at 3,983,182 to 3,983,895
_RS18375
Position (kb)
3981
3982
3983
3984 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3981.117 kb on - strand, within RR42_RS18365 at 3981.117 kb on - strand, within RR42_RS18365 at 3981.350 kb on + strand, within RR42_RS18365 at 3981.351 kb on - strand, within RR42_RS18365 at 3981.476 kb on + strand, within RR42_RS18365 at 3981.490 kb on + strand at 3981.490 kb on + strand at 3981.491 kb on - strand at 3981.491 kb on - strand at 3981.494 kb on + strand at 3981.495 kb on - strand at 3981.495 kb on - strand at 3981.495 kb on - strand at 3981.552 kb on - strand at 3981.552 kb on - strand at 3981.661 kb on + strand at 3981.685 kb on + strand at 3981.686 kb on - strand at 3981.734 kb on + strand at 3981.870 kb on - strand at 3981.870 kb on - strand at 3981.896 kb on + strand at 3981.897 kb on - strand at 3981.961 kb on + strand, within RR42_RS18370 at 3981.961 kb on + strand, within RR42_RS18370 at 3981.961 kb on + strand, within RR42_RS18370 at 3981.961 kb on + strand, within RR42_RS18370 at 3981.962 kb on - strand, within RR42_RS18370 at 3981.962 kb on - strand, within RR42_RS18370 at 3981.978 kb on + strand, within RR42_RS18370 at 3981.979 kb on - strand, within RR42_RS18370 at 3981.979 kb on - strand, within RR42_RS18370 at 3982.061 kb on - strand, within RR42_RS18370 at 3982.061 kb on - strand, within RR42_RS18370 at 3982.212 kb on + strand, within RR42_RS18370 at 3982.231 kb on + strand, within RR42_RS18370 at 3982.231 kb on + strand, within RR42_RS18370 at 3982.232 kb on - strand, within RR42_RS18370 at 3982.232 kb on - strand, within RR42_RS18370 at 3982.257 kb on + strand, within RR42_RS18370 at 3982.258 kb on - strand, within RR42_RS18370 at 3982.258 kb on - strand, within RR42_RS18370 at 3982.258 kb on - strand, within RR42_RS18370 at 3982.329 kb on + strand, within RR42_RS18370 at 3982.329 kb on + strand, within RR42_RS18370 at 3982.330 kb on - strand, within RR42_RS18370 at 3982.541 kb on + strand, within RR42_RS18370 at 3982.542 kb on - strand, within RR42_RS18370 at 3982.743 kb on - strand, within RR42_RS18370 at 3982.835 kb on + strand, within RR42_RS18370 at 3982.836 kb on - strand, within RR42_RS18370 at 3982.836 kb on - strand, within RR42_RS18370 at 3982.836 kb on - strand, within RR42_RS18370 at 3982.839 kb on + strand, within RR42_RS18370 at 3982.839 kb on + strand, within RR42_RS18370 at 3982.839 kb on + strand, within RR42_RS18370 at 3982.839 kb on + strand, within RR42_RS18370 at 3982.839 kb on + strand, within RR42_RS18370 at 3982.840 kb on - strand, within RR42_RS18370 at 3982.840 kb on - strand, within RR42_RS18370 at 3982.840 kb on - strand, within RR42_RS18370 at 3982.840 kb on - strand at 3982.856 kb on + strand, within RR42_RS18370 at 3982.856 kb on + strand, within RR42_RS18370 at 3982.856 kb on + strand, within RR42_RS18370 at 3982.973 kb on + strand at 3982.973 kb on + strand at 3982.974 kb on - strand at 3982.992 kb on + strand at 3983.107 kb on + strand at 3983.107 kb on + strand at 3983.107 kb on + strand at 3983.108 kb on - strand at 3983.137 kb on - strand at 3983.162 kb on + strand at 3983.162 kb on + strand at 3983.162 kb on + strand at 3983.163 kb on - strand at 3983.163 kb on - strand at 3983.163 kb on - strand at 3983.313 kb on - strand, within RR42_RS18375 at 3983.438 kb on + strand, within RR42_RS18375 at 3983.438 kb on + strand, within RR42_RS18375 at 3983.439 kb on - strand, within RR42_RS18375 at 3983.439 kb on - strand, within RR42_RS18375 at 3983.439 kb on - strand, within RR42_RS18375 at 3983.439 kb on - strand, within RR42_RS18375 at 3983.439 kb on - strand, within RR42_RS18375 at 3983.439 kb on - strand, within RR42_RS18375 at 3983.471 kb on + strand, within RR42_RS18375 at 3983.472 kb on - strand, within RR42_RS18375 at 3983.614 kb on + strand, within RR42_RS18375 at 3983.618 kb on + strand, within RR42_RS18375 at 3983.618 kb on + strand, within RR42_RS18375 at 3983.619 kb on - strand, within RR42_RS18375 at 3983.619 kb on - strand, within RR42_RS18375 at 3983.619 kb on - strand, within RR42_RS18375 at 3983.619 kb on - strand, within RR42_RS18375 at 3983.679 kb on + strand, within RR42_RS18375 at 3983.680 kb on - strand, within RR42_RS18375 at 3983.680 kb on - strand, within RR42_RS18375 at 3983.749 kb on + strand, within RR42_RS18375 at 3983.749 kb on + strand, within RR42_RS18375 at 3983.749 kb on + strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.797 kb on + strand, within RR42_RS18375 at 3983.858 kb on + strand at 3983.858 kb on + strand at 3983.859 kb on - strand at 3983.952 kb on - strand at 3984.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 3,981,117 - RR42_RS18365 0.56 -0.1 3,981,117 - RR42_RS18365 0.56 +1.8 3,981,350 + RR42_RS18365 0.77 +2.4 3,981,351 - RR42_RS18365 0.77 +3.1 3,981,476 + RR42_RS18365 0.89 -0.3 3,981,490 + +1.9 3,981,490 + +1.9 3,981,491 - +2.5 3,981,491 - +2.4 3,981,494 + +1.4 3,981,495 - +1.1 3,981,495 - +1.5 3,981,495 - +1.4 3,981,552 - +2.2 3,981,552 - +1.8 3,981,661 + -2.7 3,981,685 + -0.1 3,981,686 - -0.1 3,981,734 + +0.4 3,981,870 - -1.8 3,981,870 - +0.4 3,981,896 + -1.5 3,981,897 - -0.1 3,981,961 + RR42_RS18370 0.11 +0.7 3,981,961 + RR42_RS18370 0.11 +1.7 3,981,961 + RR42_RS18370 0.11 -1.5 3,981,961 + RR42_RS18370 0.11 +1.5 3,981,962 - RR42_RS18370 0.11 -2.1 3,981,962 - RR42_RS18370 0.11 -0.3 3,981,978 + RR42_RS18370 0.12 +1.7 3,981,979 - RR42_RS18370 0.12 +0.5 3,981,979 - RR42_RS18370 0.12 -0.1 3,982,061 - RR42_RS18370 0.19 -1.0 3,982,061 - RR42_RS18370 0.19 +0.3 3,982,212 + RR42_RS18370 0.31 +0.4 3,982,231 + RR42_RS18370 0.32 +0.2 3,982,231 + RR42_RS18370 0.32 -0.5 3,982,232 - RR42_RS18370 0.32 -1.9 3,982,232 - RR42_RS18370 0.32 -0.7 3,982,257 + RR42_RS18370 0.34 +0.7 3,982,258 - RR42_RS18370 0.34 -1.5 3,982,258 - RR42_RS18370 0.34 -2.1 3,982,258 - RR42_RS18370 0.34 -0.8 3,982,329 + RR42_RS18370 0.40 -0.1 3,982,329 + RR42_RS18370 0.40 -2.5 3,982,330 - RR42_RS18370 0.40 +1.3 3,982,541 + RR42_RS18370 0.57 -0.3 3,982,542 - RR42_RS18370 0.57 -1.4 3,982,743 - RR42_RS18370 0.73 +1.2 3,982,835 + RR42_RS18370 0.80 +0.2 3,982,836 - RR42_RS18370 0.80 -2.3 3,982,836 - RR42_RS18370 0.80 +0.3 3,982,836 - RR42_RS18370 0.80 +1.7 3,982,839 + RR42_RS18370 0.80 -0.6 3,982,839 + RR42_RS18370 0.80 -0.5 3,982,839 + RR42_RS18370 0.80 -0.7 3,982,839 + RR42_RS18370 0.80 +0.1 3,982,839 + RR42_RS18370 0.80 +1.0 3,982,840 - RR42_RS18370 0.80 -1.1 3,982,840 - RR42_RS18370 0.80 +0.6 3,982,840 - RR42_RS18370 0.80 -1.2 3,982,840 - -0.7 3,982,856 + RR42_RS18370 0.82 -1.2 3,982,856 + RR42_RS18370 0.82 +0.8 3,982,856 + RR42_RS18370 0.82 +0.8 3,982,973 + -1.9 3,982,973 + +0.6 3,982,974 - -0.5 3,982,992 + -1.3 3,983,107 + +1.7 3,983,107 + -0.1 3,983,107 + -0.3 3,983,108 - -0.6 3,983,137 - -2.3 3,983,162 + -0.5 3,983,162 + -1.1 3,983,162 + -0.7 3,983,163 - -1.1 3,983,163 - +0.5 3,983,163 - +2.1 3,983,313 - RR42_RS18375 0.18 -0.0 3,983,438 + RR42_RS18375 0.36 +0.2 3,983,438 + RR42_RS18375 0.36 -1.2 3,983,439 - RR42_RS18375 0.36 +0.9 3,983,439 - RR42_RS18375 0.36 -1.9 3,983,439 - RR42_RS18375 0.36 +0.3 3,983,439 - RR42_RS18375 0.36 -0.3 3,983,439 - RR42_RS18375 0.36 -1.3 3,983,439 - RR42_RS18375 0.36 -0.1 3,983,471 + RR42_RS18375 0.40 -0.4 3,983,472 - RR42_RS18375 0.41 +0.1 3,983,614 + RR42_RS18375 0.61 +0.5 3,983,618 + RR42_RS18375 0.61 -0.3 3,983,618 + RR42_RS18375 0.61 +0.5 3,983,619 - RR42_RS18375 0.61 +1.2 3,983,619 - RR42_RS18375 0.61 -0.8 3,983,619 - RR42_RS18375 0.61 -0.2 3,983,619 - RR42_RS18375 0.61 +0.7 3,983,679 + RR42_RS18375 0.70 +0.7 3,983,680 - RR42_RS18375 0.70 -1.5 3,983,680 - RR42_RS18375 0.70 -1.3 3,983,749 + RR42_RS18375 0.79 -1.7 3,983,749 + RR42_RS18375 0.79 +2.6 3,983,749 + RR42_RS18375 0.79 +1.6 3,983,750 - RR42_RS18375 0.80 +0.3 3,983,750 - RR42_RS18375 0.80 -1.7 3,983,750 - RR42_RS18375 0.80 -2.1 3,983,750 - RR42_RS18375 0.80 +0.6 3,983,750 - RR42_RS18375 0.80 -0.4 3,983,750 - RR42_RS18375 0.80 -0.8 3,983,750 - RR42_RS18375 0.80 +1.4 3,983,797 + RR42_RS18375 0.86 -2.1 3,983,858 + +0.1 3,983,858 + +0.2 3,983,859 - +1.0 3,983,952 - +1.3 3,984,043 - -0.2
Or see this region's nucleotide sequence