Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18370

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
3,981,117	-		RR42_RS18365	0.56	-0.1
3,981,117	-		RR42_RS18365	0.56	+1.8
3,981,350	+		RR42_RS18365	0.77	+2.4
3,981,351	-		RR42_RS18365	0.77	+3.1
3,981,476	+		RR42_RS18365	0.89	-0.3
3,981,490	+				+1.9
3,981,490	+				+1.9
3,981,491	-				+2.5
3,981,491	-				+2.4
3,981,494	+				+1.4
3,981,495	-				+1.1
3,981,495	-				+1.5
3,981,495	-				+1.4
3,981,552	-				+2.2
3,981,552	-				+1.8
3,981,661	+				-2.7
3,981,685	+				-0.1
3,981,686	-				-0.1
3,981,734	+				+0.4
3,981,870	-				-1.8
3,981,870	-				+0.4
3,981,896	+				-1.5
3,981,897	-				-0.1
3,981,961	+		RR42_RS18370	0.11	+0.7
3,981,961	+		RR42_RS18370	0.11	+1.7
3,981,961	+		RR42_RS18370	0.11	-1.5
3,981,961	+		RR42_RS18370	0.11	+1.5
3,981,962	-		RR42_RS18370	0.11	-2.1
3,981,962	-		RR42_RS18370	0.11	-0.3
3,981,978	+		RR42_RS18370	0.12	+1.7
3,981,979	-		RR42_RS18370	0.12	+0.5
3,981,979	-		RR42_RS18370	0.12	-0.1
3,982,061	-		RR42_RS18370	0.19	-1.0
3,982,061	-		RR42_RS18370	0.19	+0.3
3,982,212	+		RR42_RS18370	0.31	+0.4
3,982,231	+		RR42_RS18370	0.32	+0.2
3,982,231	+		RR42_RS18370	0.32	-0.5
3,982,232	-		RR42_RS18370	0.32	-1.9
3,982,232	-		RR42_RS18370	0.32	-0.7
3,982,257	+		RR42_RS18370	0.34	+0.7
3,982,258	-		RR42_RS18370	0.34	-1.5
3,982,258	-		RR42_RS18370	0.34	-2.1
3,982,258	-		RR42_RS18370	0.34	-0.8
3,982,329	+		RR42_RS18370	0.40	-0.1
3,982,329	+		RR42_RS18370	0.40	-2.5
3,982,330	-		RR42_RS18370	0.40	+1.3
3,982,541	+		RR42_RS18370	0.57	-0.3
3,982,542	-		RR42_RS18370	0.57	-1.4
3,982,743	-		RR42_RS18370	0.73	+1.2
3,982,835	+		RR42_RS18370	0.80	+0.2
3,982,836	-		RR42_RS18370	0.80	-2.3
3,982,836	-		RR42_RS18370	0.80	+0.3
3,982,836	-		RR42_RS18370	0.80	+1.7
3,982,839	+		RR42_RS18370	0.80	-0.6
3,982,839	+		RR42_RS18370	0.80	-0.5
3,982,839	+		RR42_RS18370	0.80	-0.7
3,982,839	+		RR42_RS18370	0.80	+0.1
3,982,839	+		RR42_RS18370	0.80	+1.0
3,982,840	-		RR42_RS18370	0.80	-1.1
3,982,840	-		RR42_RS18370	0.80	+0.6
3,982,840	-		RR42_RS18370	0.80	-1.2
3,982,840	-				-0.7
3,982,856	+		RR42_RS18370	0.82	-1.2
3,982,856	+		RR42_RS18370	0.82	+0.8
3,982,856	+		RR42_RS18370	0.82	+0.8
3,982,973	+				-1.9
3,982,973	+				+0.6
3,982,974	-				-0.5
3,982,992	+				-1.3
3,983,107	+				+1.7
3,983,107	+				-0.1
3,983,107	+				-0.3
3,983,108	-				-0.6
3,983,137	-				-2.3
3,983,162	+				-0.5
3,983,162	+				-1.1
3,983,162	+				-0.7
3,983,163	-				-1.1
3,983,163	-				+0.5
3,983,163	-				+2.1
3,983,313	-		RR42_RS18375	0.18	-0.0
3,983,438	+		RR42_RS18375	0.36	+0.2
3,983,438	+		RR42_RS18375	0.36	-1.2
3,983,439	-		RR42_RS18375	0.36	+0.9
3,983,439	-		RR42_RS18375	0.36	-1.9
3,983,439	-		RR42_RS18375	0.36	+0.3
3,983,439	-		RR42_RS18375	0.36	-0.3
3,983,439	-		RR42_RS18375	0.36	-1.3
3,983,439	-		RR42_RS18375	0.36	-0.1
3,983,471	+		RR42_RS18375	0.40	-0.4
3,983,472	-		RR42_RS18375	0.41	+0.1
3,983,614	+		RR42_RS18375	0.61	+0.5
3,983,618	+		RR42_RS18375	0.61	-0.3
3,983,618	+		RR42_RS18375	0.61	+0.5
3,983,619	-		RR42_RS18375	0.61	+1.2
3,983,619	-		RR42_RS18375	0.61	-0.8
3,983,619	-		RR42_RS18375	0.61	-0.2
3,983,619	-		RR42_RS18375	0.61	+0.7
3,983,679	+		RR42_RS18375	0.70	+0.7
3,983,680	-		RR42_RS18375	0.70	-1.5
3,983,680	-		RR42_RS18375	0.70	-1.3
3,983,749	+		RR42_RS18375	0.79	-1.7
3,983,749	+		RR42_RS18375	0.79	+2.6
3,983,749	+		RR42_RS18375	0.79	+1.6
3,983,750	-		RR42_RS18375	0.80	+0.3
3,983,750	-		RR42_RS18375	0.80	-1.7
3,983,750	-		RR42_RS18375	0.80	-2.1
3,983,750	-		RR42_RS18375	0.80	+0.6
3,983,750	-		RR42_RS18375	0.80	-0.4
3,983,750	-		RR42_RS18375	0.80	-0.8
3,983,750	-		RR42_RS18375	0.80	+1.4
3,983,797	+		RR42_RS18375	0.86	-2.1
3,983,858	+				+0.1
3,983,858	+				+0.2
3,983,859	-				+1.0
3,983,952	-				+1.3
3,984,043	-				-0.2