Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18350

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
3,976,068	+		RR42_RS18345	0.51	+0.5
3,976,068	+		RR42_RS18345	0.51	+0.7
3,976,068	+		RR42_RS18345	0.51	+2.0
3,976,069	-		RR42_RS18345	0.51	+0.9
3,976,069	-		RR42_RS18345	0.51	+1.0
3,976,224	+		RR42_RS18345	0.60	+0.3
3,976,225	-		RR42_RS18345	0.60	+0.6
3,976,225	-		RR42_RS18345	0.60	+2.5
3,976,440	+		RR42_RS18345	0.72	+1.7
3,976,441	-		RR42_RS18345	0.72	+2.3
3,976,441	-		RR42_RS18345	0.72	+0.3
3,976,471	-		RR42_RS18345	0.74	+1.6
3,976,533	+		RR42_RS18345	0.77	+0.7
3,976,533	+		RR42_RS18345	0.77	-0.1
3,976,533	+		RR42_RS18345	0.77	+1.4
3,976,675	-		RR42_RS18345	0.85	+1.2
3,976,675	-		RR42_RS18345	0.85	+1.6
3,976,675	-		RR42_RS18345	0.85	+1.0
3,976,683	+		RR42_RS18345	0.85	-0.7
3,976,683	+		RR42_RS18345	0.85	+0.6
3,976,683	+		RR42_RS18345	0.85	+1.9
3,976,683	+		RR42_RS18345	0.85	+0.3
3,976,684	-		RR42_RS18345	0.85	+0.8
3,976,684	-		RR42_RS18345	0.85	+1.3
3,976,684	-		RR42_RS18345	0.85	+0.8
3,976,684	-		RR42_RS18345	0.85	+1.2
3,976,693	+		RR42_RS18345	0.86	+0.7
3,976,693	+		RR42_RS18345	0.86	+1.8
3,976,790	-				+1.0
3,976,815	+				+1.0
3,976,815	+				+1.0
3,976,815	+				+2.0
3,976,815	+				+2.3
3,976,815	+				+1.1
3,976,816	-				+1.9
3,976,816	-				+0.6
3,976,842	+				+0.8
3,976,842	+				+2.1
3,976,842	+				+1.7
3,976,843	-				+1.2
3,976,843	-				+1.0
3,976,875	-				+0.8
3,976,875	-				+1.0
3,976,929	+				+1.7
3,976,929	+				+2.0
3,976,930	-				+1.4
3,976,957	+				+0.7
3,976,958	-				-0.3
3,977,282	+		RR42_RS18350	0.28	-0.3
3,977,595	+		RR42_RS18350	0.60	-1.5
3,977,596	-		RR42_RS18350	0.60	-2.0
3,977,596	-		RR42_RS18350	0.60	+1.7
3,977,596	-		RR42_RS18350	0.60	-0.4
3,977,597	+		RR42_RS18350	0.60	-0.2
3,977,876	+		RR42_RS18350	0.88	+0.6
3,977,877	-		RR42_RS18350	0.88	-1.7
3,978,082	+				-2.0
3,978,082	+				-1.3
3,978,082	+				-3.0
3,978,082	+				+1.5
3,978,082	+				-0.1
3,978,082	+				+0.7
3,978,082	+				-0.2
3,978,082	+				-0.6
3,978,083	-				-0.2
3,978,083	-				-1.5
3,978,083	-				+0.1
3,978,083	-				-1.7
3,978,083	-				+0.6
3,978,162	+		RR42_RS18355	0.11	-0.6
3,978,162	+		RR42_RS18355	0.11	-0.0
3,978,162	+		RR42_RS18355	0.11	-1.5
3,978,361	+		RR42_RS18355	0.37	+0.8
3,978,361	+		RR42_RS18355	0.37	+0.0
3,978,518	+		RR42_RS18355	0.58	-0.7
3,978,586	+		RR42_RS18355	0.67	+0.6
3,978,586	+		RR42_RS18355	0.67	-0.4
3,978,587	-		RR42_RS18355	0.67	+0.0
3,978,587	-		RR42_RS18355	0.67	-0.7
3,978,608	-		RR42_RS18355	0.70	+0.1
3,978,608	-		RR42_RS18355	0.70	-0.6
3,978,608	-		RR42_RS18355	0.70	-0.6
3,978,608	-		RR42_RS18355	0.70	-0.0
3,978,608	-		RR42_RS18355	0.70	+1.1
3,978,922	+				-1.5