Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18175

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
3,935,406	+		RR42_RS18170	0.32	+0.1
3,935,407	-		RR42_RS18170	0.33	+0.3
3,935,538	+		RR42_RS18170	0.43	+1.3
3,935,538	+		RR42_RS18170	0.43	-1.5
3,935,539	-		RR42_RS18170	0.43	-0.9
3,935,539	-		RR42_RS18170	0.43	-0.2
3,935,539	-		RR42_RS18170	0.43	-2.4
3,935,545	+		RR42_RS18170	0.43	-0.6
3,935,545	+		RR42_RS18170	0.43	+1.0
3,935,545	+		RR42_RS18170	0.43	-3.2
3,935,556	+		RR42_RS18170	0.44	+0.3
3,935,556	+		RR42_RS18170	0.44	-0.3
3,935,556	+		RR42_RS18170	0.44	+0.6
3,935,557	-		RR42_RS18170	0.44	-1.0
3,935,676	+		RR42_RS18170	0.54	+1.3
3,935,677	-		RR42_RS18170	0.54	-1.3
3,935,787	+		RR42_RS18170	0.62	-1.6
3,935,799	-		RR42_RS18170	0.63	-1.0
3,935,947	-		RR42_RS18170	0.75	-1.6
3,935,947	-		RR42_RS18170	0.75	+0.6
3,935,947	-		RR42_RS18170	0.75	+0.3
3,935,947	-		RR42_RS18170	0.75	+0.3
3,936,181	-				+0.3
3,936,265	-				-1.1
3,936,265	-				+0.1
3,936,265	-				-0.8
3,936,474	+		RR42_RS18175	0.17	+0.6
3,936,474	+		RR42_RS18175	0.17	-1.1
3,936,540	+		RR42_RS18175	0.22	-0.3
3,936,540	+		RR42_RS18175	0.22	+0.1
3,936,541	-		RR42_RS18175	0.22	-0.5
3,936,708	+		RR42_RS18175	0.36	+0.3
3,936,709	-		RR42_RS18175	0.36	+0.6
3,936,774	+		RR42_RS18175	0.42	-0.8
3,936,784	-		RR42_RS18175	0.43	-1.1
3,936,875	-		RR42_RS18175	0.50	+0.4
3,936,891	+		RR42_RS18175	0.52	-2.2
3,936,891	+		RR42_RS18175	0.52	+0.6
3,936,891	+		RR42_RS18175	0.52	+0.6
3,936,892	-		RR42_RS18175	0.52	+0.3
3,936,892	-		RR42_RS18175	0.52	-1.6
3,936,892	-		RR42_RS18175	0.52	+0.3
3,936,892	-		RR42_RS18175	0.52	+0.9
3,936,961	+		RR42_RS18175	0.57	-0.1
3,936,961	+		RR42_RS18175	0.57	+0.2
3,936,962	-		RR42_RS18175	0.58	-0.6
3,936,962	-		RR42_RS18175	0.58	-0.6
3,936,962	-		RR42_RS18175	0.58	+1.0
3,936,985	-		RR42_RS18175	0.59	-0.4
3,936,985	-		RR42_RS18175	0.59	-1.3
3,936,999	+		RR42_RS18175	0.61	+1.1
3,937,000	-		RR42_RS18175	0.61	+0.1
3,937,020	+		RR42_RS18175	0.62	-0.7
3,937,020	+		RR42_RS18175	0.62	-1.6
3,937,020	+		RR42_RS18175	0.62	+0.1
3,937,020	+		RR42_RS18175	0.62	-0.3
3,937,021	-		RR42_RS18175	0.62	+0.2
3,937,080	+		RR42_RS18175	0.67	-1.5
3,937,081	-		RR42_RS18175	0.68	+0.8
3,937,084	-		RR42_RS18175	0.68	-1.2
3,937,084	-		RR42_RS18175	0.68	-0.7
3,937,176	+		RR42_RS18175	0.75	+0.0
3,937,176	+		RR42_RS18175	0.75	-0.2
3,937,176	+		RR42_RS18175	0.75	-2.1
3,937,176	+		RR42_RS18175	0.75	+0.5
3,937,177	-		RR42_RS18175	0.76	-2.9
3,937,177	-		RR42_RS18175	0.76	+0.0
3,937,177	-		RR42_RS18175	0.76	+0.9
3,937,177	-		RR42_RS18175	0.76	+0.0
3,937,177	-		RR42_RS18175	0.76	-0.1
3,937,177	-		RR42_RS18175	0.76	-0.9
3,937,192	+		RR42_RS18175	0.77	+2.4
3,937,193	-		RR42_RS18175	0.77	-0.9
3,937,198	-		RR42_RS18175	0.77	-0.2
3,937,207	-		RR42_RS18175	0.78	-1.1
3,937,380	+				-0.6
3,937,380	+				+0.0
3,937,380	+				-2.2
3,937,381	-				-0.7
3,937,381	-				-0.6
3,937,381	-				+1.9
3,937,383	+				-1.6
3,937,383	+				-3.1
3,937,384	-				+0.6
3,937,384	-				+1.8
3,937,524	-				+0.8
3,937,946	+		RR42_RS18180	0.22	+0.7
3,938,222	+		RR42_RS18180	0.36	-2.6
3,938,222	+		RR42_RS18180	0.36	+1.2
3,938,222	+		RR42_RS18180	0.36	+0.5
3,938,223	-		RR42_RS18180	0.36	-0.3
3,938,223	-		RR42_RS18180	0.36	-0.6
3,938,223	-		RR42_RS18180	0.36	+0.4
3,938,223	-		RR42_RS18180	0.36	-0.7
3,938,223	-		RR42_RS18180	0.36	-0.1
3,938,226	+		RR42_RS18180	0.36	+1.3
3,938,226	+		RR42_RS18180	0.36	-0.8
3,938,226	+		RR42_RS18180	0.36	+0.1
3,938,226	+		RR42_RS18180	0.36	-2.1
3,938,227	-		RR42_RS18180	0.36	+1.8
3,938,234	+		RR42_RS18180	0.36	+0.9
3,938,295	-		RR42_RS18180	0.39	+0.3
3,938,409	-		RR42_RS18180	0.44	-1.3