Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18165 and RR42_RS18170 are separated by 89 nucleotides RR42_RS18170 and RR42_RS18175 are separated by 8 nucleotides
RR42_RS18165: RR42_RS18165 - carbamoyl-phosphate synthase large subunit, at 3,931,564 to 3,934,902
_RS18165
RR42_RS18170: RR42_RS18170 - amino acid ABC transporter substrate-binding protein, at 3,934,992 to 3,936,266
_RS18170
RR42_RS18175: RR42_RS18175 - aminopeptidase, at 3,936,275 to 3,937,468
_RS18175
Position (kb)
3934
3935
3936
3937 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3934.085 kb on - strand, within RR42_RS18165 at 3934.085 kb on - strand, within RR42_RS18165 at 3934.094 kb on - strand, within RR42_RS18165 at 3934.177 kb on + strand, within RR42_RS18165 at 3934.177 kb on + strand, within RR42_RS18165 at 3934.178 kb on - strand, within RR42_RS18165 at 3934.178 kb on - strand, within RR42_RS18165 at 3934.752 kb on + strand at 3934.756 kb on - strand at 3935.041 kb on + strand at 3935.232 kb on + strand, within RR42_RS18170 at 3935.233 kb on - strand, within RR42_RS18170 at 3935.233 kb on - strand, within RR42_RS18170 at 3935.406 kb on + strand, within RR42_RS18170 at 3935.407 kb on - strand, within RR42_RS18170 at 3935.538 kb on + strand, within RR42_RS18170 at 3935.538 kb on + strand, within RR42_RS18170 at 3935.539 kb on - strand, within RR42_RS18170 at 3935.539 kb on - strand, within RR42_RS18170 at 3935.539 kb on - strand, within RR42_RS18170 at 3935.545 kb on + strand, within RR42_RS18170 at 3935.545 kb on + strand, within RR42_RS18170 at 3935.545 kb on + strand, within RR42_RS18170 at 3935.556 kb on + strand, within RR42_RS18170 at 3935.556 kb on + strand, within RR42_RS18170 at 3935.556 kb on + strand, within RR42_RS18170 at 3935.557 kb on - strand, within RR42_RS18170 at 3935.676 kb on + strand, within RR42_RS18170 at 3935.677 kb on - strand, within RR42_RS18170 at 3935.787 kb on + strand, within RR42_RS18170 at 3935.799 kb on - strand, within RR42_RS18170 at 3935.947 kb on - strand, within RR42_RS18170 at 3935.947 kb on - strand, within RR42_RS18170 at 3935.947 kb on - strand, within RR42_RS18170 at 3935.947 kb on - strand, within RR42_RS18170 at 3936.181 kb on - strand at 3936.265 kb on - strand at 3936.265 kb on - strand at 3936.265 kb on - strand at 3936.474 kb on + strand, within RR42_RS18175 at 3936.474 kb on + strand, within RR42_RS18175 at 3936.540 kb on + strand, within RR42_RS18175 at 3936.540 kb on + strand, within RR42_RS18175 at 3936.541 kb on - strand, within RR42_RS18175 at 3936.708 kb on + strand, within RR42_RS18175 at 3936.709 kb on - strand, within RR42_RS18175 at 3936.774 kb on + strand, within RR42_RS18175 at 3936.784 kb on - strand, within RR42_RS18175 at 3936.875 kb on - strand, within RR42_RS18175 at 3936.891 kb on + strand, within RR42_RS18175 at 3936.891 kb on + strand, within RR42_RS18175 at 3936.891 kb on + strand, within RR42_RS18175 at 3936.892 kb on - strand, within RR42_RS18175 at 3936.892 kb on - strand, within RR42_RS18175 at 3936.892 kb on - strand, within RR42_RS18175 at 3936.892 kb on - strand, within RR42_RS18175 at 3936.961 kb on + strand, within RR42_RS18175 at 3936.961 kb on + strand, within RR42_RS18175 at 3936.962 kb on - strand, within RR42_RS18175 at 3936.962 kb on - strand, within RR42_RS18175 at 3936.962 kb on - strand, within RR42_RS18175 at 3936.985 kb on - strand, within RR42_RS18175 at 3936.985 kb on - strand, within RR42_RS18175 at 3936.999 kb on + strand, within RR42_RS18175 at 3937.000 kb on - strand, within RR42_RS18175 at 3937.020 kb on + strand, within RR42_RS18175 at 3937.020 kb on + strand, within RR42_RS18175 at 3937.020 kb on + strand, within RR42_RS18175 at 3937.020 kb on + strand, within RR42_RS18175 at 3937.021 kb on - strand, within RR42_RS18175 at 3937.080 kb on + strand, within RR42_RS18175 at 3937.081 kb on - strand, within RR42_RS18175 at 3937.084 kb on - strand, within RR42_RS18175 at 3937.084 kb on - strand, within RR42_RS18175 at 3937.176 kb on + strand, within RR42_RS18175 at 3937.176 kb on + strand, within RR42_RS18175 at 3937.176 kb on + strand, within RR42_RS18175 at 3937.176 kb on + strand, within RR42_RS18175 at 3937.177 kb on - strand, within RR42_RS18175 at 3937.177 kb on - strand, within RR42_RS18175 at 3937.177 kb on - strand, within RR42_RS18175 at 3937.177 kb on - strand, within RR42_RS18175 at 3937.177 kb on - strand, within RR42_RS18175 at 3937.177 kb on - strand, within RR42_RS18175 at 3937.192 kb on + strand, within RR42_RS18175 at 3937.193 kb on - strand, within RR42_RS18175 at 3937.198 kb on - strand, within RR42_RS18175 at 3937.207 kb on - strand, within RR42_RS18175
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 3,934,085 - RR42_RS18165 0.76 +1.2 3,934,085 - RR42_RS18165 0.76 -0.3 3,934,094 - RR42_RS18165 0.76 -0.4 3,934,177 + RR42_RS18165 0.78 -0.3 3,934,177 + RR42_RS18165 0.78 +0.5 3,934,178 - RR42_RS18165 0.78 -0.1 3,934,178 - RR42_RS18165 0.78 +0.3 3,934,752 + -3.0 3,934,756 - -0.8 3,935,041 + -0.1 3,935,232 + RR42_RS18170 0.19 +3.3 3,935,233 - RR42_RS18170 0.19 +0.6 3,935,233 - RR42_RS18170 0.19 +0.4 3,935,406 + RR42_RS18170 0.32 +0.1 3,935,407 - RR42_RS18170 0.33 +0.3 3,935,538 + RR42_RS18170 0.43 +1.3 3,935,538 + RR42_RS18170 0.43 -1.5 3,935,539 - RR42_RS18170 0.43 -0.9 3,935,539 - RR42_RS18170 0.43 -0.2 3,935,539 - RR42_RS18170 0.43 -2.4 3,935,545 + RR42_RS18170 0.43 -0.6 3,935,545 + RR42_RS18170 0.43 +1.0 3,935,545 + RR42_RS18170 0.43 -3.2 3,935,556 + RR42_RS18170 0.44 +0.3 3,935,556 + RR42_RS18170 0.44 -0.3 3,935,556 + RR42_RS18170 0.44 +0.6 3,935,557 - RR42_RS18170 0.44 -1.0 3,935,676 + RR42_RS18170 0.54 +1.3 3,935,677 - RR42_RS18170 0.54 -1.3 3,935,787 + RR42_RS18170 0.62 -1.6 3,935,799 - RR42_RS18170 0.63 -1.0 3,935,947 - RR42_RS18170 0.75 -1.6 3,935,947 - RR42_RS18170 0.75 +0.6 3,935,947 - RR42_RS18170 0.75 +0.3 3,935,947 - RR42_RS18170 0.75 +0.3 3,936,181 - +0.3 3,936,265 - -1.1 3,936,265 - +0.1 3,936,265 - -0.8 3,936,474 + RR42_RS18175 0.17 +0.6 3,936,474 + RR42_RS18175 0.17 -1.1 3,936,540 + RR42_RS18175 0.22 -0.3 3,936,540 + RR42_RS18175 0.22 +0.1 3,936,541 - RR42_RS18175 0.22 -0.5 3,936,708 + RR42_RS18175 0.36 +0.3 3,936,709 - RR42_RS18175 0.36 +0.6 3,936,774 + RR42_RS18175 0.42 -0.8 3,936,784 - RR42_RS18175 0.43 -1.1 3,936,875 - RR42_RS18175 0.50 +0.4 3,936,891 + RR42_RS18175 0.52 -2.2 3,936,891 + RR42_RS18175 0.52 +0.6 3,936,891 + RR42_RS18175 0.52 +0.6 3,936,892 - RR42_RS18175 0.52 +0.3 3,936,892 - RR42_RS18175 0.52 -1.6 3,936,892 - RR42_RS18175 0.52 +0.3 3,936,892 - RR42_RS18175 0.52 +0.9 3,936,961 + RR42_RS18175 0.57 -0.1 3,936,961 + RR42_RS18175 0.57 +0.2 3,936,962 - RR42_RS18175 0.58 -0.6 3,936,962 - RR42_RS18175 0.58 -0.6 3,936,962 - RR42_RS18175 0.58 +1.0 3,936,985 - RR42_RS18175 0.59 -0.4 3,936,985 - RR42_RS18175 0.59 -1.3 3,936,999 + RR42_RS18175 0.61 +1.1 3,937,000 - RR42_RS18175 0.61 +0.1 3,937,020 + RR42_RS18175 0.62 -0.7 3,937,020 + RR42_RS18175 0.62 -1.6 3,937,020 + RR42_RS18175 0.62 +0.1 3,937,020 + RR42_RS18175 0.62 -0.3 3,937,021 - RR42_RS18175 0.62 +0.2 3,937,080 + RR42_RS18175 0.67 -1.5 3,937,081 - RR42_RS18175 0.68 +0.8 3,937,084 - RR42_RS18175 0.68 -1.2 3,937,084 - RR42_RS18175 0.68 -0.7 3,937,176 + RR42_RS18175 0.75 +0.0 3,937,176 + RR42_RS18175 0.75 -0.2 3,937,176 + RR42_RS18175 0.75 -2.1 3,937,176 + RR42_RS18175 0.75 +0.5 3,937,177 - RR42_RS18175 0.76 -2.9 3,937,177 - RR42_RS18175 0.76 +0.0 3,937,177 - RR42_RS18175 0.76 +0.9 3,937,177 - RR42_RS18175 0.76 +0.0 3,937,177 - RR42_RS18175 0.76 -0.1 3,937,177 - RR42_RS18175 0.76 -0.9 3,937,192 + RR42_RS18175 0.77 +2.4 3,937,193 - RR42_RS18175 0.77 -0.9 3,937,198 - RR42_RS18175 0.77 -0.2 3,937,207 - RR42_RS18175 0.78 -1.1
Or see this region's nucleotide sequence