Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17010

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
3,679,229	-				+0.4
3,679,231	+				-0.3
3,679,232	-				+1.2
3,679,883	+				+1.0
3,679,883	+				+0.9
3,679,884	-				+1.6
3,679,969	+				-0.3
3,679,969	+				-0.2
3,679,969	+				-0.4
3,680,049	+				-0.3
3,680,050	-				+0.0
3,680,242	-				+0.7
3,680,283	+		RR42_RS17010	0.11	-1.5
3,680,283	+		RR42_RS17010	0.11	-0.3
3,680,283	+		RR42_RS17010	0.11	+0.4
3,680,283	+		RR42_RS17010	0.11	-1.5
3,680,283	+		RR42_RS17010	0.11	-1.3
3,680,283	+		RR42_RS17010	0.11	-0.5
3,680,284	-		RR42_RS17010	0.11	+0.2
3,680,284	-		RR42_RS17010	0.11	-1.7
3,680,284	-		RR42_RS17010	0.11	+0.0
3,680,284	-		RR42_RS17010	0.11	+0.6
3,680,338	+		RR42_RS17010	0.15	-0.9
3,680,339	-		RR42_RS17010	0.15	-0.2
3,680,339	-		RR42_RS17010	0.15	-2.1
3,680,339	-		RR42_RS17010	0.15	-1.1
3,680,340	+		RR42_RS17010	0.15	-0.8
3,680,340	+		RR42_RS17010	0.15	-1.3
3,680,340	+		RR42_RS17010	0.15	-1.6
3,680,538	+		RR42_RS17010	0.27	-0.9
3,680,538	+		RR42_RS17010	0.27	+0.0
3,680,538	+		RR42_RS17010	0.27	-2.2
3,680,614	+		RR42_RS17010	0.32	+0.6
3,680,623	+		RR42_RS17010	0.32	-2.2
3,680,623	+		RR42_RS17010	0.32	-0.8
3,680,623	+		RR42_RS17010	0.32	-0.3
3,680,623	+		RR42_RS17010	0.32	-1.3
3,680,624	-		RR42_RS17010	0.33	-0.5
3,680,624	-		RR42_RS17010	0.33	-2.8
3,680,662	-		RR42_RS17010	0.35	-1.4
3,680,707	+		RR42_RS17010	0.38	-0.3
3,680,707	+		RR42_RS17010	0.38	-2.3
3,680,707	+		RR42_RS17010	0.38	-0.3
3,680,708	-		RR42_RS17010	0.38	+0.8
3,680,708	-		RR42_RS17010	0.38	+1.1
3,680,713	+		RR42_RS17010	0.38	-0.9
3,680,713	+		RR42_RS17010	0.38	+1.2
3,680,714	-		RR42_RS17010	0.38	-0.2
3,680,714	-		RR42_RS17010	0.38	-0.6
3,680,714	-		RR42_RS17010	0.38	-1.7
3,680,736	+		RR42_RS17010	0.40	+2.6
3,680,822	-		RR42_RS17010	0.45	+0.2
3,680,822	-		RR42_RS17010	0.45	-0.6
3,680,822	-		RR42_RS17010	0.45	+0.5
3,680,861	+		RR42_RS17010	0.47	+1.0
3,681,080	+		RR42_RS17010	0.61	-2.1
3,681,080	+		RR42_RS17010	0.61	-1.2
3,681,081	-		RR42_RS17010	0.61	-1.6
3,681,130	+		RR42_RS17010	0.64	-1.1
3,681,130	+		RR42_RS17010	0.64	-0.5
3,681,130	+		RR42_RS17010	0.64	-0.1
3,681,131	-		RR42_RS17010	0.64	-1.0
3,681,131	-		RR42_RS17010	0.64	-0.9
3,681,131	-		RR42_RS17010	0.64	-0.4
3,681,131	-		RR42_RS17010	0.64	-1.2
3,681,132	+		RR42_RS17010	0.64	-0.8
3,681,132	+		RR42_RS17010	0.64	+0.9
3,681,132	+		RR42_RS17010	0.64	+0.2
3,681,132	+		RR42_RS17010	0.64	+0.4
3,681,132	+		RR42_RS17010	0.64	-1.9
3,681,133	-		RR42_RS17010	0.64	-0.9
3,681,133	-		RR42_RS17010	0.64	-4.1
3,681,133	-		RR42_RS17010	0.64	-0.8
3,681,188	-		RR42_RS17010	0.68	-0.3
3,681,424	+		RR42_RS17010	0.83	-2.2
3,681,424	+		RR42_RS17010	0.83	-2.5
3,681,425	-		RR42_RS17010	0.83	-1.8
3,681,505	+		RR42_RS17010	0.88	-1.8
3,681,505	+		RR42_RS17010	0.88	-0.6
3,681,506	-		RR42_RS17010	0.88	-1.3
3,681,508	+		RR42_RS17010	0.88	-1.5
3,681,508	+		RR42_RS17010	0.88	+0.3
3,681,509	-		RR42_RS17010	0.88	-1.3
3,681,509	-		RR42_RS17010	0.88	-2.2
3,681,549	+				-2.1
3,681,582	+				-0.6
3,681,589	+				+1.1
3,681,701	-				-0.3
3,681,749	-				+0.6
3,681,776	-				-0.6
3,681,797	-				-0.3
3,681,797	-				+1.1
3,682,177	+		RR42_RS17015	0.46	-0.8
3,682,177	+		RR42_RS17015	0.46	-0.4
3,682,178	-		RR42_RS17015	0.46	-1.9
3,682,178	-		RR42_RS17015	0.46	+0.8
3,682,178	-		RR42_RS17015	0.46	-1.3
3,682,609	+				+0.2
3,682,609	+				-1.0
3,682,610	-				+0.2
3,682,655	+				+1.4