Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16195
Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM |
---|---|---|---|---|---|
remove | |||||
3,505,361 | - | +0.1 | |||
3,505,433 | + | -2.4 | |||
3,505,713 | + | RR42_RS16190 | 0.47 | -1.8 | |
3,505,714 | + | RR42_RS16190 | 0.47 | -1.5 | |
3,505,714 | + | RR42_RS16190 | 0.47 | +0.2 | |
3,505,715 | - | RR42_RS16190 | 0.47 | -1.3 | |
3,505,715 | - | RR42_RS16190 | 0.47 | -0.8 | |
3,505,715 | - | RR42_RS16190 | 0.47 | -3.6 | |
3,505,727 | - | RR42_RS16190 | 0.49 | -0.1 | |
3,505,829 | - | RR42_RS16190 | 0.63 | +0.1 | |
3,505,829 | - | RR42_RS16190 | 0.63 | +0.1 | |
3,506,083 | + | -1.8 | |||
3,506,083 | + | -3.0 | |||
3,506,083 | + | -0.8 | |||
3,506,083 | + | -0.3 | |||
3,506,195 | + | -1.1 | |||
3,506,292 | - | -1.6 | |||
3,506,292 | - | +0.3 | |||
3,506,309 | - | +1.5 | |||
3,506,548 | + | RR42_RS16195 | 0.35 | +0.9 | |
3,506,549 | - | RR42_RS16195 | 0.35 | -0.5 | |
3,506,873 | - | RR42_RS16195 | 0.83 | +0.3 | |
3,507,846 | - | -1.3 | |||
3,507,846 | - | +0.4 | |||
3,507,853 | - | -1.4 | |||
3,507,857 | - | +0.5 | |||
3,507,857 | - | -1.3 | |||
3,507,977 | - | +1.8 | |||
3,507,977 | - | +1.0 |
Or see this region's nucleotide sequence