Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15600 and RR42_RS15605 are separated by 525 nucleotides RR42_RS15605 and RR42_RS15610 are separated by 45 nucleotides RR42_RS15610 and RR42_RS15615 are separated by 333 nucleotides
RR42_RS15600: RR42_RS15600 - glutathione S-transferase, at 3,370,645 to 3,371,301
_RS15600
RR42_RS15605: RR42_RS15605 - poly(3-hydroxybutyrate) depolymerase, at 3,371,827 to 3,373,041
_RS15605
RR42_RS15610: RR42_RS15610 - cupin, at 3,373,087 to 3,373,494
_RS15610
RR42_RS15615: RR42_RS15615 - aldose epimerase, at 3,373,828 to 3,374,763
_RS15615
Position (kb)
3371
3372
3373
3374 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3370.845 kb on - strand, within RR42_RS15600 at 3371.079 kb on - strand, within RR42_RS15600 at 3371.272 kb on - strand at 3371.435 kb on + strand at 3371.436 kb on - strand at 3371.449 kb on - strand at 3371.451 kb on + strand at 3371.451 kb on + strand at 3371.451 kb on + strand at 3371.497 kb on + strand at 3371.591 kb on - strand at 3371.786 kb on + strand at 3371.811 kb on + strand at 3371.843 kb on - strand at 3371.851 kb on + strand at 3372.115 kb on + strand, within RR42_RS15605 at 3372.214 kb on + strand, within RR42_RS15605 at 3372.215 kb on - strand, within RR42_RS15605 at 3372.215 kb on - strand, within RR42_RS15605 at 3372.280 kb on + strand, within RR42_RS15605 at 3372.286 kb on + strand, within RR42_RS15605 at 3372.287 kb on - strand, within RR42_RS15605 at 3372.523 kb on + strand, within RR42_RS15605 at 3372.523 kb on + strand, within RR42_RS15605 at 3372.523 kb on + strand, within RR42_RS15605 at 3372.524 kb on - strand, within RR42_RS15605 at 3372.524 kb on - strand, within RR42_RS15605 at 3372.563 kb on - strand, within RR42_RS15605 at 3372.637 kb on + strand, within RR42_RS15605 at 3372.691 kb on + strand, within RR42_RS15605 at 3372.733 kb on + strand, within RR42_RS15605 at 3372.734 kb on - strand, within RR42_RS15605 at 3372.734 kb on - strand, within RR42_RS15605 at 3372.734 kb on - strand, within RR42_RS15605 at 3372.795 kb on - strand, within RR42_RS15605 at 3372.867 kb on + strand, within RR42_RS15605 at 3372.925 kb on + strand at 3372.925 kb on + strand at 3372.926 kb on - strand at 3372.927 kb on + strand at 3372.927 kb on + strand at 3372.928 kb on - strand at 3372.928 kb on - strand at 3372.928 kb on - strand at 3372.965 kb on - strand at 3373.029 kb on + strand at 3373.030 kb on - strand at 3373.190 kb on + strand, within RR42_RS15610 at 3373.286 kb on + strand, within RR42_RS15610 at 3373.287 kb on - strand, within RR42_RS15610 at 3373.287 kb on - strand, within RR42_RS15610 at 3373.287 kb on - strand, within RR42_RS15610 at 3373.439 kb on + strand, within RR42_RS15610 at 3373.792 kb on + strand at 3373.845 kb on + strand at 3373.963 kb on + strand, within RR42_RS15615 at 3373.963 kb on + strand, within RR42_RS15615 at 3373.963 kb on + strand, within RR42_RS15615 at 3373.964 kb on - strand, within RR42_RS15615 at 3373.964 kb on - strand, within RR42_RS15615
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 3,370,845 - RR42_RS15600 0.30 +0.2 3,371,079 - RR42_RS15600 0.66 -0.1 3,371,272 - -2.7 3,371,435 + -0.3 3,371,436 - +0.6 3,371,449 - -0.9 3,371,451 + -1.7 3,371,451 + +0.1 3,371,451 + +1.1 3,371,497 + +0.6 3,371,591 - +0.4 3,371,786 + -0.2 3,371,811 + -1.2 3,371,843 - -0.6 3,371,851 + +0.3 3,372,115 + RR42_RS15605 0.24 -0.2 3,372,214 + RR42_RS15605 0.32 +1.0 3,372,215 - RR42_RS15605 0.32 +0.2 3,372,215 - RR42_RS15605 0.32 -1.3 3,372,280 + RR42_RS15605 0.37 -1.4 3,372,286 + RR42_RS15605 0.38 +1.3 3,372,287 - RR42_RS15605 0.38 -2.4 3,372,523 + RR42_RS15605 0.57 -0.3 3,372,523 + RR42_RS15605 0.57 -1.2 3,372,523 + RR42_RS15605 0.57 +0.8 3,372,524 - RR42_RS15605 0.57 -3.5 3,372,524 - RR42_RS15605 0.57 +1.3 3,372,563 - RR42_RS15605 0.61 -1.2 3,372,637 + RR42_RS15605 0.67 -2.2 3,372,691 + RR42_RS15605 0.71 -0.1 3,372,733 + RR42_RS15605 0.75 -2.3 3,372,734 - RR42_RS15605 0.75 -1.3 3,372,734 - RR42_RS15605 0.75 +1.0 3,372,734 - RR42_RS15605 0.75 +0.0 3,372,795 - RR42_RS15605 0.80 -0.2 3,372,867 + RR42_RS15605 0.86 +0.3 3,372,925 + +0.9 3,372,925 + +0.3 3,372,926 - -1.3 3,372,927 + +0.4 3,372,927 + -0.5 3,372,928 - +1.3 3,372,928 - +0.3 3,372,928 - -0.8 3,372,965 - +0.5 3,373,029 + +1.3 3,373,030 - +2.3 3,373,190 + RR42_RS15610 0.25 +0.4 3,373,286 + RR42_RS15610 0.49 -0.1 3,373,287 - RR42_RS15610 0.49 +0.2 3,373,287 - RR42_RS15610 0.49 +0.7 3,373,287 - RR42_RS15610 0.49 +0.6 3,373,439 + RR42_RS15610 0.86 +1.2 3,373,792 + +0.7 3,373,845 + +0.5 3,373,963 + RR42_RS15615 0.14 +1.7 3,373,963 + RR42_RS15615 0.14 +2.7 3,373,963 + RR42_RS15615 0.14 +0.9 3,373,964 - RR42_RS15615 0.15 +0.9 3,373,964 - RR42_RS15615 0.15 +0.4
Or see this region's nucleotide sequence