Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15145

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15140 and RR42_RS15145 are separated by 2 nucleotidesRR42_RS15145 and RR42_RS15150 are separated by 289 nucleotides RR42_RS15140: RR42_RS15140 - serine protease, at 3,275,861 to 3,277,297 _RS15140 RR42_RS15145: RR42_RS15145 - membrane protein, at 3,277,300 to 3,278,061 _RS15145 RR42_RS15150: RR42_RS15150 - alanyl-tRNA synthetase, at 3,278,351 to 3,280,975 _RS15150 Position (kb) 3277 3278 3279Strain fitness (log2 ratio) -2 -1 0 1 2at 3276.407 kb on + strand, within RR42_RS15140at 3276.408 kb on - strand, within RR42_RS15140at 3276.408 kb on - strand, within RR42_RS15140at 3276.409 kb on + strand, within RR42_RS15140at 3276.409 kb on + strand, within RR42_RS15140at 3276.410 kb on - strand, within RR42_RS15140at 3276.410 kb on - strand, within RR42_RS15140at 3276.410 kb on - strand, within RR42_RS15140at 3276.410 kb on - strand, within RR42_RS15140at 3276.411 kb on + strand, within RR42_RS15140at 3276.411 kb on + strand, within RR42_RS15140at 3276.412 kb on - strand, within RR42_RS15140at 3276.412 kb on - strand, within RR42_RS15140at 3276.412 kb on - strand, within RR42_RS15140at 3276.711 kb on - strand, within RR42_RS15140at 3276.711 kb on - strand, within RR42_RS15140at 3276.802 kb on + strand, within RR42_RS15140at 3276.802 kb on + strand, within RR42_RS15140at 3276.802 kb on + strand, within RR42_RS15140at 3276.803 kb on - strand, within RR42_RS15140at 3276.803 kb on - strand, within RR42_RS15140at 3276.819 kb on - strand, within RR42_RS15140at 3276.819 kb on - strand, within RR42_RS15140at 3276.870 kb on + strand, within RR42_RS15140at 3276.870 kb on + strand, within RR42_RS15140at 3276.870 kb on + strand, within RR42_RS15140at 3276.871 kb on - strand, within RR42_RS15140at 3276.871 kb on - strand, within RR42_RS15140at 3276.871 kb on - strand, within RR42_RS15140at 3276.872 kb on + strand, within RR42_RS15140at 3276.873 kb on - strand, within RR42_RS15140at 3276.873 kb on - strand, within RR42_RS15140at 3277.140 kb on + strand, within RR42_RS15140at 3277.565 kb on - strand, within RR42_RS15145at 3277.565 kb on - strand, within RR42_RS15145at 3277.746 kb on + strand, within RR42_RS15145at 3277.747 kb on - strand, within RR42_RS15145at 3277.951 kb on + strand, within RR42_RS15145at 3278.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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3,276,407 + RR42_RS15140 0.38 +2.2
3,276,408 - RR42_RS15140 0.38 +1.4
3,276,408 - RR42_RS15140 0.38 +0.6
3,276,409 + RR42_RS15140 0.38 +1.4
3,276,409 + RR42_RS15140 0.38 -0.4
3,276,410 - RR42_RS15140 0.38 -1.4
3,276,410 - RR42_RS15140 0.38 -0.1
3,276,410 - RR42_RS15140 0.38 -0.7
3,276,410 - RR42_RS15140 0.38 +0.2
3,276,411 + RR42_RS15140 0.38 +0.5
3,276,411 + RR42_RS15140 0.38 +0.8
3,276,412 - RR42_RS15140 0.38 -0.7
3,276,412 - RR42_RS15140 0.38 +0.4
3,276,412 - RR42_RS15140 0.38 -0.1
3,276,711 - RR42_RS15140 0.59 +0.1
3,276,711 - RR42_RS15140 0.59 -0.9
3,276,802 + RR42_RS15140 0.65 +0.2
3,276,802 + RR42_RS15140 0.65 +0.1
3,276,802 + RR42_RS15140 0.65 +1.4
3,276,803 - RR42_RS15140 0.66 -1.0
3,276,803 - RR42_RS15140 0.66 -2.4
3,276,819 - RR42_RS15140 0.67 +0.0
3,276,819 - RR42_RS15140 0.67 +0.1
3,276,870 + RR42_RS15140 0.70 +0.4
3,276,870 + RR42_RS15140 0.70 -1.5
3,276,870 + RR42_RS15140 0.70 -0.4
3,276,871 - RR42_RS15140 0.70 +0.2
3,276,871 - RR42_RS15140 0.70 -0.2
3,276,871 - RR42_RS15140 0.70 -1.7
3,276,872 + RR42_RS15140 0.70 -2.1
3,276,873 - RR42_RS15140 0.70 -0.5
3,276,873 - RR42_RS15140 0.70 +0.0
3,277,140 + RR42_RS15140 0.89 -0.4
3,277,565 - RR42_RS15145 0.35 -0.2
3,277,565 - RR42_RS15145 0.35 +0.1
3,277,746 + RR42_RS15145 0.59 -0.4
3,277,747 - RR42_RS15145 0.59 +1.2
3,277,951 + RR42_RS15145 0.85 +1.4
3,278,093 - +1.6

Or see this region's nucleotide sequence