Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13855

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,985,865	+		RR42_RS13840	0.89	-1.0
2,985,865	+		RR42_RS13840	0.89	+0.4
2,985,866	-		RR42_RS13840	0.89	+0.8
2,985,866	-		RR42_RS13840	0.89	-1.8
2,985,866	-		RR42_RS13840	0.89	-0.3
2,985,868	+		RR42_RS13840	0.89	+0.1
2,985,869	-		RR42_RS13840	0.89	+0.0
2,985,892	+				-2.1
2,985,892	+				-0.9
2,985,892	+				+0.6
2,985,893	-				-1.8
2,985,893	-				-0.6
2,985,893	-				-0.7
2,985,893	-				-0.7
2,985,961	+				+0.4
2,985,961	+				-0.2
2,985,962	-				-2.0
2,985,962	-				+0.8
2,985,991	+				-1.4
2,986,201	-		RR42_RS13845	0.31	-0.6
2,986,323	+		RR42_RS13845	0.73	-2.9
2,986,323	+		RR42_RS13845	0.73	+0.5
2,986,323	+		RR42_RS13845	0.73	-0.2
2,986,324	-		RR42_RS13845	0.74	+1.7
2,986,343	+		RR42_RS13845	0.80	+0.4
2,986,344	-		RR42_RS13845	0.81	-0.4
2,986,344	-		RR42_RS13845	0.81	-0.6
2,986,355	+		RR42_RS13845	0.85	-0.1
2,986,373	+				-3.1
2,986,374	-				-0.1
2,986,605	+		RR42_RS13850	0.40	+0.2
2,986,605	+		RR42_RS13850	0.40	+0.5
2,986,606	-		RR42_RS13850	0.41	+1.6
2,986,606	-		RR42_RS13850	0.41	+0.3
2,986,819	+				+1.4
2,986,820	-				+0.9
2,986,820	-				+0.8
2,986,824	-				-0.0
2,986,889	+		RR42_RS13855	0.35	-0.0
2,986,889	+		RR42_RS13855	0.35	+0.5
2,986,890	-		RR42_RS13855	0.35	-0.3
2,986,957	+		RR42_RS13855	0.68	+0.8
2,986,957	+		RR42_RS13855	0.68	+0.5
2,986,957	+		RR42_RS13855	0.68	+1.5
2,986,957	+		RR42_RS13855	0.68	+0.4
2,986,957	+		RR42_RS13855	0.68	+1.0
2,986,958	-		RR42_RS13855	0.69	-1.6
2,986,958	-		RR42_RS13855	0.69	-3.9
2,986,958	-		RR42_RS13855	0.69	-1.8
2,986,958	-		RR42_RS13855	0.69	+0.1
2,987,055	+				-1.1
2,987,055	+				-2.9
2,987,055	+				-0.3
2,987,056	-				+0.4
2,987,056	-				-0.3
2,987,056	-				-2.1
2,987,056	-				+0.2
2,987,166	-		RR42_RS13860	0.34	-1.1
2,987,210	+		RR42_RS13860	0.58	+0.6
2,987,210	+		RR42_RS13860	0.58	+0.0
2,987,211	-		RR42_RS13860	0.58	-0.9
2,987,211	-		RR42_RS13860	0.58	+0.3
2,987,365	+				+1.4
2,987,366	-				+0.2
2,987,366	-				-1.1
2,987,366	-				+0.5
2,987,448	+		RR42_RS13865	0.31	+1.5
2,987,449	-		RR42_RS13865	0.31	+0.6
2,987,742	+				-0.9
2,987,743	-				-0.5
2,987,743	-				+0.1
2,987,865	+				-1.0
2,987,866	-				+0.2
2,987,897	+				+0.4
2,987,897	+				-0.4
2,987,897	+				+2.1
2,987,898	-				+0.3
2,987,898	-				-0.6
2,987,898	-				-1.8
2,987,898	-				-0.9
2,987,898	-				-0.2
2,987,898	-				-1.3
2,987,898	-				-0.4
2,987,898	-				-1.2
2,987,900	-				+0.8
2,987,930	-				+0.8
2,987,943	+				-1.4
2,987,944	-				-0.2
2,987,944	-				+0.5
2,987,969	+				+0.6