Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11000

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,348,075	+		RR42_RS10995	0.13	+3.2
2,348,075	+		RR42_RS10995	0.13	-0.3
2,348,279	+		RR42_RS10995	0.34	+1.3
2,348,279	+		RR42_RS10995	0.34	+1.0
2,348,280	-		RR42_RS10995	0.34	-1.7
2,348,360	+		RR42_RS10995	0.42	-0.4
2,348,447	+		RR42_RS10995	0.51	-1.1
2,348,447	+		RR42_RS10995	0.51	-0.6
2,348,486	+		RR42_RS10995	0.55	-0.6
2,348,486	+		RR42_RS10995	0.55	-0.1
2,348,486	+		RR42_RS10995	0.55	-2.6
2,348,487	-		RR42_RS10995	0.55	+0.4
2,348,487	-		RR42_RS10995	0.55	-2.9
2,348,487	-		RR42_RS10995	0.55	-0.8
2,348,487	-		RR42_RS10995	0.55	-1.9
2,348,487	-		RR42_RS10995	0.55	-0.7
2,348,487	-		RR42_RS10995	0.55	+0.1
2,348,487	-		RR42_RS10995	0.55	+3.0
2,348,487	-		RR42_RS10995	0.55	+1.0
2,348,561	+		RR42_RS10995	0.63	+0.3
2,348,562	-		RR42_RS10995	0.63	-2.3
2,348,604	-		RR42_RS10995	0.67	+0.3
2,348,646	-		RR42_RS10995	0.71	-0.0
2,348,955	+				+1.1
2,348,955	+				-1.5
2,348,955	+				-1.3
2,348,955	+				+0.5
2,348,955	+				-1.1
2,348,955	+				+0.5
2,348,956	-				-0.1
2,348,956	-				-1.0
2,348,961	+				-2.0
2,348,961	+				-3.1
2,348,961	+				-0.3
2,348,961	+				+0.4
2,348,961	+				+0.2
2,348,961	+				+0.4
2,348,961	+				-2.0
2,348,962	-				+2.4
2,348,962	-				-0.2
2,348,969	+				+1.4
2,348,975	+				+2.4
2,348,976	-				+0.3
2,349,151	+		RR42_RS11000	0.11	-0.9
2,349,152	-		RR42_RS11000	0.11	+1.2
2,349,152	-		RR42_RS11000	0.11	+0.3
2,349,230	-		RR42_RS11000	0.19	+1.0
2,349,341	-		RR42_RS11000	0.31	+0.4
2,349,341	-		RR42_RS11000	0.31	+0.3
2,349,382	+		RR42_RS11000	0.35	-0.2
2,349,439	+		RR42_RS11000	0.41	-1.1
2,349,439	+		RR42_RS11000	0.41	-1.3
2,349,439	+		RR42_RS11000	0.41	-0.8
2,349,440	-		RR42_RS11000	0.41	-2.1
2,349,440	-		RR42_RS11000	0.41	-1.6
2,349,440	-		RR42_RS11000	0.41	-2.3
2,349,440	-		RR42_RS11000	0.41	+0.7
2,349,646	+		RR42_RS11000	0.62	-1.1
2,349,749	-		RR42_RS11000	0.73	-0.3
2,349,796	+		RR42_RS11000	0.78	-0.7
2,349,797	-		RR42_RS11000	0.78	+1.1
2,350,175	+				-2.9
2,350,176	-				+0.9
2,350,206	-				+1.1
2,350,324	+				-0.6
2,350,324	+				+0.4
2,350,324	+				-3.8
2,350,324	+				+0.9
2,350,324	+				-0.2
2,350,324	+				+0.6
2,350,325	-				+0.4
2,350,325	-				+0.1
2,350,325	-				+0.4
2,350,325	-				+0.4
2,350,325	-				-1.2
2,350,325	-				+0.5
2,350,325	-				+0.3
2,350,509	-		RR42_RS11005	0.16	-0.2
2,350,672	+		RR42_RS11005	0.30	+0.0
2,350,672	+		RR42_RS11005	0.30	-1.0
2,350,673	-		RR42_RS11005	0.30	+1.0
2,350,844	+		RR42_RS11005	0.45	-2.6
2,350,844	+		RR42_RS11005	0.45	-0.3
2,350,844	+		RR42_RS11005	0.45	-0.5
2,350,844	+		RR42_RS11005	0.45	+1.4
2,351,001	+		RR42_RS11005	0.59	-1.2
2,351,002	-		RR42_RS11005	0.59	-2.1