Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10015

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,138,514	+		RR42_RS10005	0.78	-2.4
2,138,823	-				+0.1
2,138,823	-				-0.7
2,139,242	+		RR42_RS10010	0.73	+0.4
2,139,278	+		RR42_RS10010	0.78	+1.7
2,139,279	-		RR42_RS10010	0.78	-0.6
2,139,413	+				+0.6
2,139,473	+				+0.6
2,139,473	+				+0.3
2,139,474	-				+1.3
2,139,515	+				-1.0
2,139,515	+				-0.5
2,139,515	+				-0.3
2,139,516	-				+0.5
2,139,516	-				-1.6
2,139,561	-				-1.0
2,139,561	-				-2.2
2,139,728	+		RR42_RS10015	0.17	-0.5
2,139,807	-		RR42_RS10015	0.23	+2.2
2,139,807	-		RR42_RS10015	0.23	-0.2
2,139,843	+		RR42_RS10015	0.26	-1.7
2,139,843	+		RR42_RS10015	0.26	-0.0
2,139,844	-		RR42_RS10015	0.26	-1.7
2,139,844	-		RR42_RS10015	0.26	-1.4
2,140,158	-		RR42_RS10015	0.50	+0.3
2,140,186	-		RR42_RS10015	0.52	+1.2
2,140,186	-		RR42_RS10015	0.52	-0.6
2,140,214	+		RR42_RS10015	0.54	-2.3
2,140,215	-		RR42_RS10015	0.54	+0.8
2,140,287	+		RR42_RS10015	0.60	+0.3
2,140,287	+		RR42_RS10015	0.60	-0.8
2,140,288	-		RR42_RS10015	0.60	-2.1
2,140,409	+		RR42_RS10015	0.69	+0.9
2,140,409	+		RR42_RS10015	0.69	-0.4
2,140,410	-		RR42_RS10015	0.69	-2.1
2,140,537	+		RR42_RS10015	0.79	-2.4
2,140,537	+		RR42_RS10015	0.79	+0.1
2,140,538	-		RR42_RS10015	0.79	-1.9
2,140,662	-		RR42_RS10015	0.89	-0.5
2,140,662	-		RR42_RS10015	0.89	-0.5
2,140,662	-		RR42_RS10015	0.89	-1.4
2,140,839	+				-0.7
2,140,839	+				-0.2
2,140,839	+				+0.8
2,140,839	+				-0.5
2,140,839	+				-0.5
2,140,839	+				-1.4
2,140,840	-				-0.1
2,140,884	+				+1.9
2,140,983	+		RR42_RS10020	0.34	-2.1
2,140,983	+		RR42_RS10020	0.34	-2.9
2,141,091	+		RR42_RS10020	0.65	-1.7
2,141,100	+		RR42_RS10020	0.68	-1.4
2,141,101	-		RR42_RS10020	0.68	+0.1
2,141,101	-		RR42_RS10020	0.68	+0.4
2,141,101	-		RR42_RS10020	0.68	-0.1
2,141,307	+				+0.1
2,141,428	+		RR42_RS10025	0.46	+0.4
2,141,428	+		RR42_RS10025	0.46	+0.5
2,141,428	+		RR42_RS10025	0.46	+0.9
2,141,428	+		RR42_RS10025	0.46	-1.4
2,141,429	-		RR42_RS10025	0.46	+0.8
2,141,429	-		RR42_RS10025	0.46	-0.1
2,141,449	-		RR42_RS10025	0.54	+0.6
2,141,526	+		RR42_RS10025	0.82	-0.1
2,141,526	+		RR42_RS10025	0.82	+1.1
2,141,527	-		RR42_RS10025	0.82	+0.3
2,141,527	-		RR42_RS10025	0.82	-0.1
2,141,528	+		RR42_RS10025	0.82	+1.1
2,141,528	+		RR42_RS10025	0.82	+0.6
2,141,528	+		RR42_RS10025	0.82	+0.5
2,141,528	+		RR42_RS10025	0.82	+2.2
2,141,528	+		RR42_RS10025	0.82	+0.5
2,141,529	-		RR42_RS10025	0.83	-0.7
2,141,529	-		RR42_RS10025	0.83	-0.2
2,141,529	-		RR42_RS10025	0.83	-0.1
2,141,529	-		RR42_RS10025	0.83	-0.9
2,141,529	-		RR42_RS10025	0.83	+0.5
2,141,529	-		RR42_RS10025	0.83	+0.0
2,141,668	+				+0.3