Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09430

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,000,046	+		RR42_RS09425	0.37	+1.6
2,000,046	+		RR42_RS09425	0.37	-0.0
2,000,047	-		RR42_RS09425	0.38	-0.1
2,000,047	-		RR42_RS09425	0.38	+0.1
2,000,112	+		RR42_RS09425	0.42	-0.4
2,000,112	+		RR42_RS09425	0.42	+0.7
2,000,112	+		RR42_RS09425	0.42	-0.4
2,000,112	+		RR42_RS09425	0.42	-0.9
2,000,112	+		RR42_RS09425	0.42	-0.6
2,000,113	-		RR42_RS09425	0.42	-0.8
2,000,323	+		RR42_RS09425	0.57	-0.1
2,000,324	-		RR42_RS09425	0.57	+1.2
2,000,533	+		RR42_RS09425	0.72	-1.1
2,000,534	-		RR42_RS09425	0.73	-0.2
2,000,779	-				+0.5
2,000,870	-				-0.5
2,000,917	-				+0.6
2,000,971	-				-0.5
2,000,971	-				-0.6
2,000,971	-				-0.6
2,000,971	-				+0.2
2,000,971	-				+0.4
2,001,132	+				+0.2
2,001,133	-				+0.3
2,001,309	+		RR42_RS09430	0.19	+0.8
2,001,313	+		RR42_RS09430	0.20	-1.1
2,001,313	+		RR42_RS09430	0.20	-2.5
2,001,313	+		RR42_RS09430	0.20	-1.2
2,001,314	-		RR42_RS09430	0.20	+0.3
2,001,314	-		RR42_RS09430	0.20	-1.7
2,001,384	+		RR42_RS09430	0.24	-0.7
2,001,453	+		RR42_RS09430	0.29	+0.6
2,001,486	+		RR42_RS09430	0.31	-1.8
2,001,487	-		RR42_RS09430	0.31	+0.4
2,001,618	+		RR42_RS09430	0.40	+0.4
2,001,619	-		RR42_RS09430	0.40	+0.1
2,001,640	-		RR42_RS09430	0.41	-0.2
2,001,640	-		RR42_RS09430	0.41	-0.1
2,001,787	-		RR42_RS09430	0.51	+0.7
2,001,787	-		RR42_RS09430	0.51	-0.1
2,001,787	-		RR42_RS09430	0.51	+0.3
2,001,804	+		RR42_RS09430	0.52	+0.3
2,001,804	+		RR42_RS09430	0.52	+0.4
2,001,805	-		RR42_RS09430	0.52	+0.0
2,001,805	-		RR42_RS09430	0.52	-1.3
2,001,805	-		RR42_RS09430	0.52	+0.4
2,001,909	+		RR42_RS09430	0.59	-1.8
2,001,944	+		RR42_RS09430	0.61	-1.2
2,001,944	+		RR42_RS09430	0.61	-2.9
2,001,944	+		RR42_RS09430	0.61	+0.1
2,001,945	-		RR42_RS09430	0.61	-2.4
2,001,945	-		RR42_RS09430	0.61	-0.3
2,001,948	+		RR42_RS09430	0.62	-0.9
2,001,948	+		RR42_RS09430	0.62	-1.1
2,001,949	-		RR42_RS09430	0.62	+0.9
2,001,949	-		RR42_RS09430	0.62	-1.1
2,001,975	+		RR42_RS09430	0.63	-2.5
2,002,081	+		RR42_RS09430	0.71	-0.1
2,002,082	-		RR42_RS09430	0.71	-2.0
2,002,082	-		RR42_RS09430	0.71	+0.4
2,002,083	+		RR42_RS09430	0.71	-0.2
2,002,294	+		RR42_RS09430	0.85	+0.2
2,002,295	-		RR42_RS09430	0.85	-0.5
2,002,295	-		RR42_RS09430	0.85	-2.8
2,002,342	-		RR42_RS09430	0.88	-2.5
2,002,342	-		RR42_RS09430	0.88	+0.1
2,002,380	+				-0.1
2,002,381	-				-0.1
2,002,381	-				+1.5
2,002,381	-				-0.3
2,002,491	+				+0.1
2,002,491	+				+0.2
2,002,511	+				-1.9
2,002,585	+				+1.2
2,002,609	+				-1.4
2,002,610	-				+0.9
2,002,610	-				-1.2
2,002,610	-				-0.7
2,002,642	+				-2.2
2,002,829	+				-0.5
2,002,830	-				-0.2
2,002,830	-				+0.5
2,002,838	+				-2.5
2,002,839	-				+0.2
2,002,849	-		RR42_RS09435	0.10	+1.2
2,002,986	-		RR42_RS09435	0.37	+1.3
2,003,010	+		RR42_RS09435	0.42	+0.0
2,003,044	+		RR42_RS09435	0.48	-0.2
2,003,100	+		RR42_RS09435	0.59	+0.8