Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09320 and RR42_RS09325 overlap by 4 nucleotides RR42_RS09325 and RR42_RS09330 are separated by 55 nucleotides RR42_RS09330 and RR42_RS09335 are separated by 336 nucleotides
RR42_RS09320: RR42_RS09320 - long-chain fatty acid--CoA ligase, at 1,970,561 to 1,972,123
_RS09320
RR42_RS09325: RR42_RS09325 - citrate synthase, at 1,972,120 to 1,972,917
_RS09325
RR42_RS09330: RR42_RS09330 - 3-oxoacyl-ACP reductase, at 1,972,973 to 1,973,773
_RS09330
RR42_RS09335: RR42_RS09335 - DNA polymerase II, at 1,974,110 to 1,976,485
_RS09335
Position (kb) 1972
1973
1974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1972.174 kb on - strand at 1972.363 kb on + strand, within RR42_RS09325 at 1972.363 kb on + strand, within RR42_RS09325 at 1972.364 kb on - strand, within RR42_RS09325 at 1972.523 kb on - strand, within RR42_RS09325 at 1972.591 kb on + strand, within RR42_RS09325 at 1972.698 kb on + strand, within RR42_RS09325 at 1972.698 kb on + strand, within RR42_RS09325 at 1972.699 kb on - strand, within RR42_RS09325 at 1972.877 kb on - strand at 1973.066 kb on + strand, within RR42_RS09330 at 1973.432 kb on + strand, within RR42_RS09330 at 1973.433 kb on - strand, within RR42_RS09330 at 1973.433 kb on - strand, within RR42_RS09330 at 1973.510 kb on + strand, within RR42_RS09330 at 1973.510 kb on + strand, within RR42_RS09330 at 1973.511 kb on - strand, within RR42_RS09330 at 1973.511 kb on - strand, within RR42_RS09330 at 1973.511 kb on - strand, within RR42_RS09330 at 1973.511 kb on - strand, within RR42_RS09330 at 1973.511 kb on - strand, within RR42_RS09330 at 1973.717 kb on + strand at 1973.717 kb on + strand at 1973.801 kb on - strand at 1973.801 kb on - strand at 1973.801 kb on - strand at 1973.835 kb on - strand at 1974.073 kb on - strand at 1974.359 kb on + strand, within RR42_RS09335 at 1974.359 kb on + strand, within RR42_RS09335 at 1974.425 kb on + strand, within RR42_RS09335 at 1974.426 kb on - strand, within RR42_RS09335 at 1974.563 kb on + strand, within RR42_RS09335 at 1974.662 kb on + strand, within RR42_RS09335 at 1974.662 kb on + strand, within RR42_RS09335 at 1974.663 kb on - strand, within RR42_RS09335 at 1974.663 kb on - strand, within RR42_RS09335 at 1974.663 kb on - strand, within RR42_RS09335 at 1974.663 kb on - strand, within RR42_RS09335 at 1974.664 kb on + strand, within RR42_RS09335 at 1974.665 kb on - strand, within RR42_RS09335 at 1974.665 kb on - strand, within RR42_RS09335 at 1974.665 kb on - strand, within RR42_RS09335 at 1974.717 kb on - strand, within RR42_RS09335
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 1,972,174 - +1.3 1,972,363 + RR42_RS09325 0.30 +0.2 1,972,363 + RR42_RS09325 0.30 +1.2 1,972,364 - RR42_RS09325 0.31 -0.5 1,972,523 - RR42_RS09325 0.51 -0.3 1,972,591 + RR42_RS09325 0.59 +2.2 1,972,698 + RR42_RS09325 0.72 +2.7 1,972,698 + RR42_RS09325 0.72 -2.8 1,972,699 - RR42_RS09325 0.73 -1.9 1,972,877 - +1.5 1,973,066 + RR42_RS09330 0.12 -1.2 1,973,432 + RR42_RS09330 0.57 +0.1 1,973,433 - RR42_RS09330 0.57 -0.8 1,973,433 - RR42_RS09330 0.57 +0.5 1,973,510 + RR42_RS09330 0.67 +0.9 1,973,510 + RR42_RS09330 0.67 -1.2 1,973,511 - RR42_RS09330 0.67 -0.3 1,973,511 - RR42_RS09330 0.67 -1.4 1,973,511 - RR42_RS09330 0.67 -0.6 1,973,511 - RR42_RS09330 0.67 -1.5 1,973,511 - RR42_RS09330 0.67 +0.2 1,973,717 + +1.0 1,973,717 + +0.5 1,973,801 - -0.6 1,973,801 - -1.1 1,973,801 - +0.9 1,973,835 - +0.6 1,974,073 - -0.6 1,974,359 + RR42_RS09335 0.10 -0.1 1,974,359 + RR42_RS09335 0.10 +0.7 1,974,425 + RR42_RS09335 0.13 +0.8 1,974,426 - RR42_RS09335 0.13 -0.4 1,974,563 + RR42_RS09335 0.19 +0.6 1,974,662 + RR42_RS09335 0.23 +1.0 1,974,662 + RR42_RS09335 0.23 -1.2 1,974,663 - RR42_RS09335 0.23 -3.0 1,974,663 - RR42_RS09335 0.23 -0.6 1,974,663 - RR42_RS09335 0.23 -0.8 1,974,663 - RR42_RS09335 0.23 -0.6 1,974,664 + RR42_RS09335 0.23 -0.5 1,974,665 - RR42_RS09335 0.23 -0.4 1,974,665 - RR42_RS09335 0.23 +0.4 1,974,665 - RR42_RS09335 0.23 -1.4 1,974,717 - RR42_RS09335 0.26 -0.9
Or see this region's nucleotide sequence