Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08995

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,888,679	+		RR42_RS08990	0.38	-0.5
1,888,798	-		RR42_RS08990	0.48	-0.7
1,888,798	-		RR42_RS08990	0.48	+1.2
1,888,798	-		RR42_RS08990	0.48	-0.1
1,889,009	+		RR42_RS08990	0.67	-0.4
1,889,010	-		RR42_RS08990	0.67	-0.2
1,889,081	+		RR42_RS08990	0.73	-0.1
1,889,082	-		RR42_RS08990	0.73	+0.4
1,889,082	-		RR42_RS08990	0.73	+0.9
1,889,189	+		RR42_RS08990	0.82	+0.6
1,889,190	-		RR42_RS08990	0.82	-1.1
1,889,222	+		RR42_RS08990	0.85	+3.0
1,889,223	-		RR42_RS08990	0.85	-0.1
1,889,263	+		RR42_RS08990	0.88	-0.4
1,889,263	+		RR42_RS08990	0.88	+0.9
1,889,264	-		RR42_RS08990	0.88	+0.4
1,889,348	+				-2.4
1,889,348	+				-0.4
1,889,419	-				+0.4
1,889,426	+				-0.5
1,889,452	+				-0.5
1,889,475	-				+0.1
1,889,489	+				+0.1
1,889,489	+				-0.5
1,889,489	+				-0.2
1,889,489	+				+0.9
1,889,490	-				+0.5
1,889,490	-				-1.1
1,889,490	-				-0.3
1,889,490	-				-0.1
1,889,569	+				-1.5
1,889,801	+		RR42_RS08995	0.33	-3.6
1,889,801	+		RR42_RS08995	0.33	+0.9
1,889,802	-		RR42_RS08995	0.33	-1.1
1,889,802	-		RR42_RS08995	0.33	-1.4
1,889,884	+		RR42_RS08995	0.50	-0.4
1,890,130	-				-1.6
1,890,171	+				-0.1
1,890,171	+				-0.9
1,890,172	-				-2.8
1,890,232	+				+0.2
1,890,232	+				-1.3
1,890,233	-				-1.4
1,890,233	-				+0.6
1,890,259	-				-0.8
1,890,259	-				+0.2
1,890,269	+				+1.1
1,890,269	+				-2.1
1,890,269	+				+0.2
1,890,269	+				+0.8
1,890,269	+				+0.4
1,890,269	+				+0.6
1,890,269	+				-1.5
1,890,270	-				-0.4
1,890,270	-				-1.5
1,890,270	-				-3.3
1,890,291	+				+0.5
1,890,291	+				-0.0
1,890,291	+				-0.2
1,890,292	-				-1.2
1,890,292	-				+0.4
1,890,292	-				+2.6
1,890,292	-				-1.3
1,890,422	+				+0.0
1,890,422	+				+0.4
1,890,423	-				-0.2
1,890,423	-				-0.4
1,890,430	-				-3.2
1,890,451	+				-0.8
1,890,452	-				+0.6
1,890,452	-				+1.0
1,890,456	+				-0.6
1,890,471	+				+0.3
1,890,471	+				+0.1
1,890,472	-				-1.7
1,890,472	-				-0.6
1,890,518	+		RR42_RS09000	0.22	+1.4
1,890,518	+		RR42_RS09000	0.22	-1.9
1,890,518	+		RR42_RS09000	0.22	+0.1
1,890,519	-		RR42_RS09000	0.22	-1.2
1,890,519	-		RR42_RS09000	0.22	-1.9
1,890,519	-		RR42_RS09000	0.22	+0.5
1,890,575	+		RR42_RS09000	0.44	-0.8
1,890,576	-		RR42_RS09000	0.45	-1.5
1,890,576	-		RR42_RS09000	0.45	+0.1
1,890,676	+		RR42_RS09000	0.85	-0.3
1,890,700	+				-0.4
1,890,700	+				+2.2
1,890,700	+				+1.9
1,890,700	+				-1.5
1,890,701	-				-0.6
1,890,701	-				+1.2
1,890,701	-				-0.4
1,890,701	-				-1.5
1,890,701	-				+0.0
1,890,724	+				-0.1
1,890,725	-				+0.8
1,890,788	+				+1.4
1,890,788	+				-0.2
1,890,788	+				+1.8
1,890,788	+				+0.6
1,890,788	+				+0.7
1,890,789	-				+0.0
1,890,789	-				+0.7
1,890,789	-				-0.9
1,891,094	+		RR42_RS09005	0.31	+0.0
1,891,094	+		RR42_RS09005	0.31	+0.8
1,891,094	+		RR42_RS09005	0.31	-1.9
1,891,094	+		RR42_RS09005	0.31	-0.2
1,891,095	-		RR42_RS09005	0.31	+0.1
1,891,095	-		RR42_RS09005	0.31	+0.6