Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08795

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08785 and RR42_RS08790 are separated by 157 nucleotidesRR42_RS08790 and RR42_RS08795 are separated by 50 nucleotidesRR42_RS08795 and RR42_RS08800 are separated by 140 nucleotidesRR42_RS08800 and RR42_RS08805 are separated by 52 nucleotides RR42_RS08785: RR42_RS08785 - lipid carrier protein, at 1,841,740 to 1,842,192 _RS08785 RR42_RS08790: RR42_RS08790 - zinc-binding protein, at 1,842,350 to 1,842,799 _RS08790 RR42_RS08795: RR42_RS08795 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 1,842,850 to 1,843,428 _RS08795 RR42_RS08800: RR42_RS08800 - peptidylprolyl isomerase, at 1,843,569 to 1,844,315 _RS08800 RR42_RS08805: RR42_RS08805 - nitrate reductase, at 1,844,368 to 1,845,051 _RS08805 Position (kb) 1842 1843 1844Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1842.104 kb on - strand, within RR42_RS08785at 1842.234 kb on + strandat 1842.235 kb on - strandat 1842.235 kb on - strandat 1842.235 kb on - strandat 1842.300 kb on + strandat 1842.390 kb on - strandat 1842.433 kb on + strand, within RR42_RS08790at 1842.762 kb on + strandat 1842.763 kb on - strandat 1842.763 kb on - strandat 1842.805 kb on + strandat 1842.805 kb on + strandat 1842.830 kb on - strandat 1842.954 kb on + strand, within RR42_RS08795at 1843.059 kb on - strand, within RR42_RS08795at 1843.136 kb on - strand, within RR42_RS08795at 1843.136 kb on - strand, within RR42_RS08795at 1843.311 kb on + strand, within RR42_RS08795at 1843.769 kb on - strand, within RR42_RS08800at 1844.250 kb on - strandat 1844.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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1,842,104 - RR42_RS08785 0.80 -0.5
1,842,234 + +0.0
1,842,235 - -1.2
1,842,235 - -1.1
1,842,235 - +1.1
1,842,300 + -0.9
1,842,390 - -2.2
1,842,433 + RR42_RS08790 0.18 -0.7
1,842,762 + +0.5
1,842,763 - -0.5
1,842,763 - +0.9
1,842,805 + +2.5
1,842,805 + -0.1
1,842,830 - -0.4
1,842,954 + RR42_RS08795 0.18 -3.0
1,843,059 - RR42_RS08795 0.36 -0.2
1,843,136 - RR42_RS08795 0.49 -1.8
1,843,136 - RR42_RS08795 0.49 -1.7
1,843,311 + RR42_RS08795 0.80 -1.1
1,843,769 - RR42_RS08800 0.27 +0.7
1,844,250 - +1.3
1,844,305 - +0.5

Or see this region's nucleotide sequence