Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08290

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08285 and RR42_RS08290 are separated by 447 nucleotidesRR42_RS08290 and RR42_RS08295 are separated by 62 nucleotidesRR42_RS08295 and RR42_RS08300 overlap by 1 nucleotides RR42_RS08285: RR42_RS08285 - tail protein, at 1,755,836 to 1,756,330 _RS08285 RR42_RS08290: RR42_RS08290 - hypothetical protein, at 1,756,778 to 1,757,818 _RS08290 RR42_RS08295: RR42_RS08295 - hypothetical protein, at 1,757,881 to 1,758,321 _RS08295 RR42_RS08300: RR42_RS08300 - hypothetical protein, at 1,758,321 to 1,758,701 _RS08300 Position (kb) 1756 1757 1758Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1755.779 kb on + strandat 1755.780 kb on - strandat 1755.821 kb on + strandat 1755.843 kb on - strandat 1755.843 kb on - strandat 1755.890 kb on + strand, within RR42_RS08285at 1755.988 kb on + strand, within RR42_RS08285at 1755.988 kb on + strand, within RR42_RS08285at 1755.988 kb on + strand, within RR42_RS08285at 1755.988 kb on + strand, within RR42_RS08285at 1755.988 kb on + strand, within RR42_RS08285at 1755.989 kb on - strand, within RR42_RS08285at 1756.094 kb on + strand, within RR42_RS08285at 1756.095 kb on - strand, within RR42_RS08285at 1756.259 kb on + strand, within RR42_RS08285at 1756.260 kb on - strand, within RR42_RS08285at 1756.260 kb on - strand, within RR42_RS08285at 1756.484 kb on + strandat 1756.636 kb on + strandat 1756.637 kb on - strandat 1756.637 kb on - strandat 1756.712 kb on + strandat 1756.986 kb on - strand, within RR42_RS08290at 1756.986 kb on - strand, within RR42_RS08290at 1756.986 kb on - strand, within RR42_RS08290at 1757.165 kb on + strand, within RR42_RS08290at 1757.165 kb on + strand, within RR42_RS08290at 1757.166 kb on - strand, within RR42_RS08290at 1757.166 kb on - strand, within RR42_RS08290at 1757.209 kb on + strand, within RR42_RS08290at 1757.427 kb on - strand, within RR42_RS08290at 1757.462 kb on + strand, within RR42_RS08290at 1757.462 kb on + strand, within RR42_RS08290at 1757.463 kb on - strand, within RR42_RS08290at 1757.463 kb on - strand, within RR42_RS08290at 1757.537 kb on + strand, within RR42_RS08290at 1757.537 kb on + strand, within RR42_RS08290at 1757.630 kb on + strand, within RR42_RS08290at 1757.631 kb on - strand, within RR42_RS08290at 1757.869 kb on + strandat 1757.870 kb on - strandat 1757.881 kb on - strandat 1757.895 kb on + strandat 1757.895 kb on + strandat 1758.109 kb on + strand, within RR42_RS08295at 1758.110 kb on - strand, within RR42_RS08295at 1758.133 kb on + strand, within RR42_RS08295at 1758.134 kb on - strand, within RR42_RS08295at 1758.174 kb on + strand, within RR42_RS08295at 1758.174 kb on + strand, within RR42_RS08295at 1758.507 kb on - strand, within RR42_RS08300at 1758.594 kb on + strand, within RR42_RS08300at 1758.594 kb on + strand, within RR42_RS08300at 1758.594 kb on + strand, within RR42_RS08300at 1758.598 kb on + strand, within RR42_RS08300at 1758.598 kb on + strand, within RR42_RS08300at 1758.727 kb on - strandat 1758.817 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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1,755,779 + -2.9
1,755,780 - -0.1
1,755,821 + -0.2
1,755,843 - -0.6
1,755,843 - -0.3
1,755,890 + RR42_RS08285 0.11 +0.5
1,755,988 + RR42_RS08285 0.31 +0.6
1,755,988 + RR42_RS08285 0.31 -0.3
1,755,988 + RR42_RS08285 0.31 -1.2
1,755,988 + RR42_RS08285 0.31 +0.1
1,755,988 + RR42_RS08285 0.31 -3.0
1,755,989 - RR42_RS08285 0.31 -0.2
1,756,094 + RR42_RS08285 0.52 +0.8
1,756,095 - RR42_RS08285 0.52 -0.2
1,756,259 + RR42_RS08285 0.85 +0.8
1,756,260 - RR42_RS08285 0.86 +0.1
1,756,260 - RR42_RS08285 0.86 -2.5
1,756,484 + +1.2
1,756,636 + +0.4
1,756,637 - +0.9
1,756,637 - +0.3
1,756,712 + +1.2
1,756,986 - RR42_RS08290 0.20 -0.1
1,756,986 - RR42_RS08290 0.20 -0.6
1,756,986 - RR42_RS08290 0.20 -0.5
1,757,165 + RR42_RS08290 0.37 -0.1
1,757,165 + RR42_RS08290 0.37 +0.2
1,757,166 - RR42_RS08290 0.37 -2.1
1,757,166 - RR42_RS08290 0.37 -1.6
1,757,209 + RR42_RS08290 0.41 +0.8
1,757,427 - RR42_RS08290 0.62 +3.1
1,757,462 + RR42_RS08290 0.66 -1.1
1,757,462 + RR42_RS08290 0.66 +0.5
1,757,463 - RR42_RS08290 0.66 +1.8
1,757,463 - RR42_RS08290 0.66 +0.9
1,757,537 + RR42_RS08290 0.73 -0.5
1,757,537 + RR42_RS08290 0.73 +1.7
1,757,630 + RR42_RS08290 0.82 -1.1
1,757,631 - RR42_RS08290 0.82 +0.0
1,757,869 + -2.4
1,757,870 - -0.1
1,757,881 - +0.6
1,757,895 + -2.9
1,757,895 + +0.1
1,758,109 + RR42_RS08295 0.52 +0.9
1,758,110 - RR42_RS08295 0.52 -0.2
1,758,133 + RR42_RS08295 0.57 +0.5
1,758,134 - RR42_RS08295 0.57 +2.8
1,758,174 + RR42_RS08295 0.66 -0.1
1,758,174 + RR42_RS08295 0.66 +0.9
1,758,507 - RR42_RS08300 0.49 +0.1
1,758,594 + RR42_RS08300 0.72 -1.0
1,758,594 + RR42_RS08300 0.72 +1.0
1,758,594 + RR42_RS08300 0.72 +0.5
1,758,598 + RR42_RS08300 0.73 +0.6
1,758,598 + RR42_RS08300 0.73 -0.9
1,758,727 - +0.9
1,758,817 + +0.6

Or see this region's nucleotide sequence