Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07915

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07910 and RR42_RS07915 are separated by 9 nucleotidesRR42_RS07915 and RR42_RS07920 are separated by 52 nucleotidesRR42_RS07920 and RR42_RS07925 are separated by 32 nucleotides RR42_RS07910: RR42_RS07910 - RND transporter MFP subunit, at 1,697,767 to 1,698,963 _RS07910 RR42_RS07915: RR42_RS07915 - multidrug transporter AcrB, at 1,698,973 to 1,702,086 _RS07915 RR42_RS07920: RR42_RS07920 - cyclophilin-like superfamily protein, at 1,702,139 to 1,702,549 _RS07920 RR42_RS07925: RR42_RS07925 - amidase, at 1,702,582 to 1,703,772 _RS07925 Position (kb) 1698 1699 1700 1701 1702 1703Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1698.176 kb on - strand, within RR42_RS07910at 1698.176 kb on - strand, within RR42_RS07910at 1698.176 kb on - strand, within RR42_RS07910at 1698.176 kb on - strand, within RR42_RS07910at 1698.176 kb on - strand, within RR42_RS07910at 1698.227 kb on - strand, within RR42_RS07910at 1698.359 kb on - strand, within RR42_RS07910at 1698.773 kb on - strand, within RR42_RS07910at 1699.033 kb on + strandat 1699.163 kb on + strandat 1699.164 kb on - strandat 1699.164 kb on - strandat 1699.380 kb on - strand, within RR42_RS07915at 1699.402 kb on + strand, within RR42_RS07915at 1699.402 kb on + strand, within RR42_RS07915at 1699.414 kb on + strand, within RR42_RS07915at 1699.414 kb on + strand, within RR42_RS07915at 1699.441 kb on + strand, within RR42_RS07915at 1699.441 kb on + strand, within RR42_RS07915at 1699.442 kb on - strand, within RR42_RS07915at 1699.442 kb on - strand, within RR42_RS07915at 1699.543 kb on + strand, within RR42_RS07915at 1699.543 kb on + strand, within RR42_RS07915at 1699.544 kb on - strand, within RR42_RS07915at 1699.544 kb on - strand, within RR42_RS07915at 1699.544 kb on - strand, within RR42_RS07915at 1699.777 kb on + strand, within RR42_RS07915at 1699.778 kb on - strand, within RR42_RS07915at 1699.786 kb on + strand, within RR42_RS07915at 1699.787 kb on - strand, within RR42_RS07915at 1700.061 kb on + strand, within RR42_RS07915at 1700.061 kb on + strand, within RR42_RS07915at 1700.062 kb on - strand, within RR42_RS07915at 1700.062 kb on - strand, within RR42_RS07915at 1700.062 kb on - strand, within RR42_RS07915at 1700.178 kb on - strand, within RR42_RS07915at 1700.300 kb on - strand, within RR42_RS07915at 1700.392 kb on + strand, within RR42_RS07915at 1700.455 kb on + strand, within RR42_RS07915at 1700.468 kb on - strand, within RR42_RS07915at 1700.532 kb on + strand, within RR42_RS07915at 1700.542 kb on + strand, within RR42_RS07915at 1700.632 kb on + strand, within RR42_RS07915at 1700.827 kb on + strand, within RR42_RS07915at 1700.828 kb on - strand, within RR42_RS07915at 1702.027 kb on + strandat 1702.027 kb on + strandat 1702.028 kb on - strandat 1702.311 kb on + strand, within RR42_RS07920at 1702.324 kb on - strand, within RR42_RS07920at 1702.757 kb on + strand, within RR42_RS07925at 1702.757 kb on + strand, within RR42_RS07925at 1702.758 kb on - strand, within RR42_RS07925at 1703.015 kb on + strand, within RR42_RS07925at 1703.016 kb on - strand, within RR42_RS07925at 1703.016 kb on - strand, within RR42_RS07925

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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1,698,176 - RR42_RS07910 0.34 -0.0
1,698,176 - RR42_RS07910 0.34 +0.6
1,698,176 - RR42_RS07910 0.34 +0.3
1,698,176 - RR42_RS07910 0.34 +1.2
1,698,176 - RR42_RS07910 0.34 +0.5
1,698,227 - RR42_RS07910 0.38 -0.3
1,698,359 - RR42_RS07910 0.49 -1.4
1,698,773 - RR42_RS07910 0.84 -0.8
1,699,033 + -1.6
1,699,163 + -0.4
1,699,164 - +0.6
1,699,164 - +1.1
1,699,380 - RR42_RS07915 0.13 +0.7
1,699,402 + RR42_RS07915 0.14 -1.6
1,699,402 + RR42_RS07915 0.14 +1.1
1,699,414 + RR42_RS07915 0.14 +0.2
1,699,414 + RR42_RS07915 0.14 -0.0
1,699,441 + RR42_RS07915 0.15 +0.6
1,699,441 + RR42_RS07915 0.15 -1.4
1,699,442 - RR42_RS07915 0.15 +2.0
1,699,442 - RR42_RS07915 0.15 +0.2
1,699,543 + RR42_RS07915 0.18 -1.4
1,699,543 + RR42_RS07915 0.18 +0.6
1,699,544 - RR42_RS07915 0.18 -0.2
1,699,544 - RR42_RS07915 0.18 -0.9
1,699,544 - RR42_RS07915 0.18 -0.1
1,699,777 + RR42_RS07915 0.26 -0.0
1,699,778 - RR42_RS07915 0.26 +1.6
1,699,786 + RR42_RS07915 0.26 +0.1
1,699,787 - RR42_RS07915 0.26 +1.6
1,700,061 + RR42_RS07915 0.35 -0.6
1,700,061 + RR42_RS07915 0.35 +0.4
1,700,062 - RR42_RS07915 0.35 +0.3
1,700,062 - RR42_RS07915 0.35 -0.6
1,700,062 - RR42_RS07915 0.35 +1.6
1,700,178 - RR42_RS07915 0.39 +0.5
1,700,300 - RR42_RS07915 0.43 -1.2
1,700,392 + RR42_RS07915 0.46 +0.6
1,700,455 + RR42_RS07915 0.48 -0.3
1,700,468 - RR42_RS07915 0.48 +1.3
1,700,532 + RR42_RS07915 0.50 -2.4
1,700,542 + RR42_RS07915 0.50 -1.6
1,700,632 + RR42_RS07915 0.53 -0.6
1,700,827 + RR42_RS07915 0.60 -0.1
1,700,828 - RR42_RS07915 0.60 -0.5
1,702,027 + +0.2
1,702,027 + -0.9
1,702,028 - +0.3
1,702,311 + RR42_RS07920 0.42 -1.0
1,702,324 - RR42_RS07920 0.45 -3.1
1,702,757 + RR42_RS07925 0.15 -2.1
1,702,757 + RR42_RS07925 0.15 +1.1
1,702,758 - RR42_RS07925 0.15 -0.1
1,703,015 + RR42_RS07925 0.36 +0.3
1,703,016 - RR42_RS07925 0.36 +0.5
1,703,016 - RR42_RS07925 0.36 -0.5

Or see this region's nucleotide sequence