Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07340

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,563,968	+		RR42_RS07335	0.28	+0.6
1,564,099	+		RR42_RS07335	0.39	-2.1
1,564,099	+		RR42_RS07335	0.39	-0.0
1,564,099	+		RR42_RS07335	0.39	-0.8
1,564,099	+		RR42_RS07335	0.39	-0.4
1,564,099	+		RR42_RS07335	0.39	-1.5
1,564,099	+		RR42_RS07335	0.39	-1.2
1,564,099	+		RR42_RS07335	0.39	-0.3
1,564,099	+		RR42_RS07335	0.39	+3.3
1,564,099	+		RR42_RS07335	0.39	+0.2
1,564,100	-		RR42_RS07335	0.39	-0.4
1,564,100	-		RR42_RS07335	0.39	+0.4
1,564,100	-		RR42_RS07335	0.39	-0.0
1,564,173	+		RR42_RS07335	0.45	-0.8
1,564,173	+		RR42_RS07335	0.45	-0.6
1,564,301	+		RR42_RS07335	0.56	-0.2
1,564,302	-		RR42_RS07335	0.56	+0.2
1,564,355	-		RR42_RS07335	0.60	-2.4
1,564,364	+		RR42_RS07335	0.61	-2.9
1,564,433	-		RR42_RS07335	0.66	-1.3
1,564,433	-		RR42_RS07335	0.66	-1.6
1,564,433	-		RR42_RS07335	0.66	+0.4
1,564,613	+		RR42_RS07335	0.81	+0.5
1,564,614	-		RR42_RS07335	0.81	-0.3
1,564,676	+		RR42_RS07335	0.86	-1.0
1,564,676	+		RR42_RS07335	0.86	-2.7
1,564,676	+		RR42_RS07335	0.86	-1.0
1,564,677	-		RR42_RS07335	0.86	-0.2
1,564,677	-		RR42_RS07335	0.86	-0.3
1,564,677	-		RR42_RS07335	0.86	-0.5
1,564,677	-		RR42_RS07335	0.86	+1.1
1,564,740	-				-0.1
1,564,740	-				-0.3
1,564,748	+				+0.5
1,564,861	-				-3.3
1,564,861	-				-0.6
1,564,880	-				+0.4
1,564,880	-				+0.0
1,565,065	+				-2.2
1,565,065	+				+1.0
1,565,066	-				-2.5
1,565,066	-				+1.1
1,565,098	+		RR42_RS07340	0.10	-0.5
1,565,098	+		RR42_RS07340	0.10	-1.4
1,565,098	+		RR42_RS07340	0.10	-0.8
1,565,098	+		RR42_RS07340	0.10	+0.4
1,565,098	+		RR42_RS07340	0.10	-1.2
1,565,099	-		RR42_RS07340	0.10	-2.3
1,565,099	-		RR42_RS07340	0.10	+0.1
1,565,099	-		RR42_RS07340	0.10	-0.3
1,565,099	-		RR42_RS07340	0.10	+1.3
1,565,099	-		RR42_RS07340	0.10	-2.3
1,565,099	-		RR42_RS07340	0.10	-1.1
1,565,104	+		RR42_RS07340	0.11	-0.6
1,565,104	+		RR42_RS07340	0.11	-1.8
1,565,104	+		RR42_RS07340	0.11	-3.8
1,565,104	+		RR42_RS07340	0.11	-1.0
1,565,105	-		RR42_RS07340	0.11	+1.8
1,565,105	-		RR42_RS07340	0.11	-1.1
1,565,135	+		RR42_RS07340	0.12	-0.7
1,565,136	-		RR42_RS07340	0.12	-3.3
1,565,507	+		RR42_RS07340	0.30	-0.9
1,565,507	+		RR42_RS07340	0.30	+0.8
1,565,507	+		RR42_RS07340	0.30	+0.0
1,565,507	+		RR42_RS07340	0.30	+0.7
1,565,507	+		RR42_RS07340	0.30	+2.0
1,565,507	+		RR42_RS07340	0.30	-1.7
1,565,508	-		RR42_RS07340	0.30	-0.9
1,565,508	-		RR42_RS07340	0.30	-0.7
1,565,508	-		RR42_RS07340	0.30	+0.2
1,565,508	-		RR42_RS07340	0.30	-0.7
1,565,508	-		RR42_RS07340	0.30	-1.2
1,565,716	+		RR42_RS07340	0.40	+1.0
1,565,716	+		RR42_RS07340	0.40	-0.4
1,565,748	+		RR42_RS07340	0.41	-0.2
1,565,748	+		RR42_RS07340	0.41	-0.3
1,565,869	+		RR42_RS07340	0.47	-0.5
1,565,869	+		RR42_RS07340	0.47	-0.9
1,565,870	-		RR42_RS07340	0.47	-1.9
1,565,870	-		RR42_RS07340	0.47	-0.5
1,565,877	+		RR42_RS07340	0.47	-1.0
1,565,877	+		RR42_RS07340	0.47	-0.5
1,565,877	+		RR42_RS07340	0.47	+0.5
1,565,930	-		RR42_RS07340	0.50	-1.4
1,566,113	-		RR42_RS07340	0.58	-0.4
1,566,161	+		RR42_RS07340	0.61	-0.6
1,566,162	-		RR42_RS07340	0.61	-1.6
1,566,162	-		RR42_RS07340	0.61	-1.0
1,566,200	-		RR42_RS07340	0.63	-0.8
1,566,241	+		RR42_RS07340	0.64	-0.4
1,566,241	+		RR42_RS07340	0.64	-0.5
1,566,242	-		RR42_RS07340	0.64	-1.6
1,566,242	-		RR42_RS07340	0.64	-0.5
1,566,242	-		RR42_RS07340	0.64	-1.2
1,566,242	-		RR42_RS07340	0.64	+0.5
1,566,275	-		RR42_RS07340	0.66	-0.5
1,566,275	-		RR42_RS07340	0.66	+0.6
1,566,292	+		RR42_RS07340	0.67	-1.1
1,566,293	-		RR42_RS07340	0.67	-1.4
1,566,419	-		RR42_RS07340	0.73	-0.4
1,566,419	-		RR42_RS07340	0.73	+0.3
1,566,619	+		RR42_RS07340	0.82	+0.1
1,566,620	-		RR42_RS07340	0.82	-1.7
1,566,620	-		RR42_RS07340	0.82	-1.6
1,566,620	-		RR42_RS07340	0.82	-1.3
1,566,620	-		RR42_RS07340	0.82	-0.1
1,566,628	+		RR42_RS07340	0.83	+1.3
1,566,628	+		RR42_RS07340	0.83	+1.0
1,566,628	+		RR42_RS07340	0.83	-0.2
1,566,713	+		RR42_RS07340	0.87	+1.1
1,567,016	+				-1.1